Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 CASC19-260ENST00000641828 2001 ntBASIC4.84□□□□□ -1.63
USF1P22415 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
USF1P22415 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.84□□□□□ -1.63
USF1P22415 CR383656.5-201ENST00000547616 1340 ntBASIC4.84□□□□□ -1.63
USF1P22415 AC092451.3-201ENST00000625067 1343 ntBASIC4.84□□□□□ -1.63
USF1P22415 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC4.84□□□□□ -1.63
USF1P22415 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
USF1P22415 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
USF1P22415 AC019205.1-201ENST00000421830 730 ntBASIC4.84□□□□□ -1.63
USF1P22415 AC113412.1-201ENST00000425840 504 ntBASIC4.84□□□□□ -1.63
USF1P22415 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.84□□□□□ -1.63
USF1P22415 MGAT2P2-201ENST00000427194 797 ntBASIC4.84□□□□□ -1.63
USF1P22415 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC4.84□□□□□ -1.63
USF1P22415 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC4.84□□□□□ -1.63
USF1P22415 FMO7P-201ENST00000436045 768 ntBASIC4.84□□□□□ -1.63
USF1P22415 AL663074.2-201ENST00000440621 479 ntBASIC4.84□□□□□ -1.63
USF1P22415 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
USF1P22415 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC4.84□□□□□ -1.63
USF1P22415 FRG2FP-204ENST00000453982 852 ntBASIC4.84□□□□□ -1.63
USF1P22415 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC4.84□□□□□ -1.63
USF1P22415 RN7SL799P-201ENST00000475891 298 ntBASIC4.84□□□□□ -1.63
USF1P22415 PFN1P6-201ENST00000476786 399 ntBASIC4.84□□□□□ -1.63
USF1P22415 AC079080.1-201ENST00000479841 822 ntBASIC4.84□□□□□ -1.63
USF1P22415 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC4.84□□□□□ -1.63
USF1P22415 RN7SKP288-201ENST00000516227 268 ntBASIC4.84□□□□□ -1.63
USF1P22415 IGLV3-30-201ENST00000524362 298 ntBASIC4.84□□□□□ -1.63
USF1P22415 DCN-210ENST00000547568 823 ntTSL 3 BASIC4.84□□□□□ -1.63
USF1P22415 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC4.84□□□□□ -1.63
USF1P22415 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
USF1P22415 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC4.84□□□□□ -1.63
USF1P22415 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC4.84□□□□□ -1.63
USF1P22415 AL163952.1-202ENST00000569625 600 ntBASIC4.84□□□□□ -1.63
USF1P22415 MIR1269B-201ENST00000580405 75 ntBASIC4.84□□□□□ -1.63
USF1P22415 AC022919.1-201ENST00000624979 626 ntBASIC4.84□□□□□ -1.63
USF1P22415 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC4.84□□□□□ -1.63
USF1P22415 AC073869.7-201ENST00000640874 297 ntBASIC4.84□□□□□ -1.63
USF1P22415 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.84□□□□□ -1.63
USF1P22415 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
USF1P22415 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.64
USF1P22415 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
USF1P22415 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.83□□□□□ -1.64
USF1P22415 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
USF1P22415 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC4.83□□□□□ -1.64
USF1P22415 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
USF1P22415 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
USF1P22415 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
USF1P22415 AC114786.1-201ENST00000512892 1415 ntBASIC4.83□□□□□ -1.64
USF1P22415 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
USF1P22415 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
USF1P22415 AC117409.1-201ENST00000470499 1310 ntBASIC4.83□□□□□ -1.64
USF1P22415 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC4.83□□□□□ -1.64
USF1P22415 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
USF1P22415 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
USF1P22415 MIR1286-201ENST00000408112 78 ntBASIC4.83□□□□□ -1.64
USF1P22415 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.83□□□□□ -1.64
USF1P22415 CFL1P1-202ENST00000432948 411 ntBASIC4.83□□□□□ -1.64
USF1P22415 KRT8P51-201ENST00000438938 274 ntBASIC4.83□□□□□ -1.64
USF1P22415 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC4.83□□□□□ -1.64
USF1P22415 RNU1-88P-201ENST00000459274 128 ntBASIC4.83□□□□□ -1.64
USF1P22415 AC087672.1-201ENST00000479876 766 ntBASIC4.83□□□□□ -1.64
USF1P22415 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC4.83□□□□□ -1.64
USF1P22415 KATNBL1P4-201ENST00000503545 918 ntBASIC4.83□□□□□ -1.64
USF1P22415 SUMO2P4-201ENST00000504193 276 ntBASIC4.83□□□□□ -1.64
USF1P22415 AC021678.3-201ENST00000517893 476 ntBASIC4.83□□□□□ -1.64
USF1P22415 NRBF2P4-201ENST00000520874 850 ntBASIC4.83□□□□□ -1.64
USF1P22415 AC007346.2-201ENST00000564816 892 ntBASIC4.83□□□□□ -1.64
USF1P22415 AC015720.2-201ENST00000567709 334 ntBASIC4.83□□□□□ -1.64
USF1P22415 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.83□□□□□ -1.64
USF1P22415 AC002069.2-201ENST00000603580 883 ntBASIC4.83□□□□□ -1.64
USF1P22415 Z95327.3-201ENST00000610385 572 ntBASIC4.83□□□□□ -1.64
USF1P22415 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.83□□□□□ -1.64
USF1P22415 AC079776.5-201ENST00000641920 211 ntBASIC4.83□□□□□ -1.64
USF1P22415 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
USF1P22415 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
USF1P22415 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC4.83□□□□□ -1.64
USF1P22415 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
USF1P22415 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
USF1P22415 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
USF1P22415 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 AL355834.1-201ENST00000556602 3965 ntBASIC4.82□□□□□ -1.64
USF1P22415 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
USF1P22415 AC053481.2-202ENST00000582394 1500 ntBASIC4.82□□□□□ -1.64
USF1P22415 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 AC068870.3-201ENST00000625077 2536 ntBASIC4.82□□□□□ -1.64
USF1P22415 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC4.82□□□□□ -1.64
USF1P22415 CASC19-255ENST00000641733 1385 ntBASIC4.82□□□□□ -1.64
USF1P22415 CA1-225ENST00000626824 2405 ntTSL 5 BASIC4.82□□□□□ -1.64
USF1P22415 AC006484.1-201ENST00000435086 1884 ntBASIC4.82□□□□□ -1.64
USF1P22415 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC4.82□□□□□ -1.64
USF1P22415 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
USF1P22415 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC4.82□□□□□ -1.64
USF1P22415 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
USF1P22415 DNAJA1P3-201ENST00000399417 1194 ntBASIC4.82□□□□□ -1.64
USF1P22415 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 SPTLC1P2-201ENST00000407089 121 ntBASIC4.82□□□□□ -1.64
USF1P22415 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms