Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC7.99□□□□□ -1.13
HLA-CQ95604 RPL27-205ENST00000589037 585 ntAPPRIS P1 TSL 3 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AL359999.1-201ENST00000604513 294 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC7.99□□□□□ -1.13
HLA-CQ95604 CUX2P1-201ENST00000606426 298 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AC011816.2-201ENST00000607089 556 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC007792.1-201ENST00000623023 402 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AC021106.3-201ENST00000623925 531 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 MIR665-201ENST00000635949 72 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 BCL2L11-224ENST00000639340 243 ntTSL 5 BASIC7.99□□□□□ -1.13
HLA-CQ95604 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC7.99□□□□□ -1.13
HLA-CQ95604 MAT1A-201ENST00000372213 3410 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 MTIF2-203ENST00000394600 2221 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AL512504.2-201ENST00000445455 1909 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 OPTN-204ENST00000378752 3488 ntAPPRIS ALT1 TSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC117382.2-201ENST00000564748 3151 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 GDI2P1-201ENST00000429312 1336 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC7.99□□□□□ -1.13
HLA-CQ95604 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 STK32B-204ENST00000510398 3241 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC079777.1-201ENST00000623836 1953 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 OR51D1-202ENST00000641817 3561 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
HLA-CQ95604 THBS3-201ENST00000368378 3145 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 CAMK2D-214ENST00000515496 1533 ntTSL 5 BASIC7.98□□□□□ -1.13
HLA-CQ95604 LINC00954-202ENST00000449086 2995 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 LAMB4-202ENST00000388781 5858 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 EEF1A1P14-201ENST00000421195 1376 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 RAP2C-205ENST00000620646 3341 ntTSL 5 BASIC7.98□□□□□ -1.13
HLA-CQ95604 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC7.98□□□□□ -1.13
HLA-CQ95604 HCG18-244ENST00000602516 2890 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 TNR-202ENST00000367674 12949 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
HLA-CQ95604 CNTNAP4-202ENST00000377504 4723 ntTSL 5 BASIC7.98□□□□□ -1.13
HLA-CQ95604 PFKFB1-203ENST00000545676 1591 ntTSL 2 BASIC7.98□□□□□ -1.13
HLA-CQ95604 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 GLDN-202ENST00000396399 4584 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC7.98□□□□□ -1.13
HLA-CQ95604 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 Y_RNA.67-201ENST00000362870 100 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 RNU6-451P-201ENST00000362921 107 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 SSX9-201ENST00000376909 591 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 CUBN-201ENST00000377823 705 ntTSL 3 BASIC7.98□□□□□ -1.13
HLA-CQ95604 RNU6-463P-201ENST00000384340 107 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC7.98□□□□□ -1.13
HLA-CQ95604 OR9R1P-201ENST00000412200 877 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC7.98□□□□□ -1.13
HLA-CQ95604 SNRPFP1-201ENST00000414761 252 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC7.98□□□□□ -1.13
HLA-CQ95604 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC7.98□□□□□ -1.13
HLA-CQ95604 USP9YP36-201ENST00000424581 829 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 AC134879.1-201ENST00000426062 394 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC7.98□□□□□ -1.13
HLA-CQ95604 OR10G8-201ENST00000431524 1045 ntAPPRIS P1 BASIC7.98□□□□□ -1.13
HLA-CQ95604 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC7.98□□□□□ -1.13
HLA-CQ95604 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC7.98□□□□□ -1.13
HLA-CQ95604 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC7.98□□□□□ -1.13
HLA-CQ95604 AC132479.1-201ENST00000449160 144 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC7.98□□□□□ -1.13
HLA-CQ95604 RPL7P48-201ENST00000461513 746 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 AC063943.1-201ENST00000465434 453 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 RPL7P19-201ENST00000469948 618 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 RN7SL233P-201ENST00000469988 277 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC7.98□□□□□ -1.13
HLA-CQ95604 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC7.98□□□□□ -1.13
HLA-CQ95604 APOBEC3AP1-201ENST00000511396 287 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 AL135978.1-201ENST00000553618 1266 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 AC244034.2-201ENST00000562504 509 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 AC116348.2-201ENST00000563751 577 ntTSL 4 BASIC7.98□□□□□ -1.13
HLA-CQ95604 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 AC018558.5-201ENST00000565840 952 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 AC141257.3-201ENST00000572906 215 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC7.98□□□□□ -1.13
HLA-CQ95604 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC7.98□□□□□ -1.13
HLA-CQ95604 AC092960.1-201ENST00000604762 351 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 AL133215.3-201ENST00000609801 448 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 AL031777.2-201ENST00000611953 196 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 AC211486.4-201ENST00000621495 113 ntBASIC7.98□□□□□ -1.13
HLA-CQ95604 RAB5B-210ENST00000553116 3322 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 FRRS1-201ENST00000287474 2678 ntAPPRIS P1 TSL 2 BASIC7.98□□□□□ -1.13
HLA-CQ95604 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 PPARGC1A-206ENST00000507380 2385 ntTSL 2 BASIC7.98□□□□□ -1.13
HLA-CQ95604 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 NBPF26-207ENST00000619748 2933 ntTSL 5 BASIC7.98□□□□□ -1.13
HLA-CQ95604 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC7.98□□□□□ -1.13
HLA-CQ95604 TBX5-201ENST00000310346 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 CTNND1-215ENST00000526938 3489 ntTSL 5 BASIC7.98□□□□□ -1.13
HLA-CQ95604 BCL2L14-204ENST00000396367 1886 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 ANKUB1-201ENST00000446160 2419 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
HLA-CQ95604 BCAS1-202ENST00000395961 3303 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
HLA-CQ95604 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC7.98□□□□□ -1.13
HLA-CQ95604 AC025822.2-201ENST00000455199 2287 ntTSL 2 BASIC7.98□□□□□ -1.13
HLA-CQ95604 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
HLA-CQ95604 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
HLA-CQ95604 AC104051.2-201ENST00000518934 2461 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-CQ95604 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC7.97□□□□□ -1.13
HLA-CQ95604 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms