Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CYB5R4-202ENST00000369681 9252 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL6A3P12111 SDK2-201ENST00000392650 10723 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
COL6A3P12111 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL6A3P12111 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC5.4□□□□□ -1.54
COL6A3P12111 RPL23AP24-201ENST00000458203 385 ntBASIC5.4□□□□□ -1.54
COL6A3P12111 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC5.4□□□□□ -1.54
COL6A3P12111 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
COL6A3P12111 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.4□□□□□ -1.54
COL6A3P12111 AL356863.1-201ENST00000623378 1080 ntBASIC5.4□□□□□ -1.54
COL6A3P12111 CDH7-202ENST00000397968 12231 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL6A3P12111 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.4□□□□□ -1.55
COL6A3P12111 ATXN1-202ENST00000436367 10587 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL6A3P12111 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL6A3P12111 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.55
COL6A3P12111 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL6A3P12111 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.4□□□□□ -1.55
COL6A3P12111 RPL12P43-201ENST00000420608 499 ntBASIC5.4□□□□□ -1.55
COL6A3P12111 OR1H1P-201ENST00000448731 937 ntBASIC5.4□□□□□ -1.55
COL6A3P12111 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC5.4□□□□□ -1.55
COL6A3P12111 AC105254.2-201ENST00000603636 436 ntBASIC5.4□□□□□ -1.55
COL6A3P12111 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC5.4□□□□□ -1.55
COL6A3P12111 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.4□□□□□ -1.55
COL6A3P12111 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.4□□□□□ -1.55
COL6A3P12111 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC5.4□□□□□ -1.55
COL6A3P12111 MYO5A-202ENST00000358212 12220 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
COL6A3P12111 MYO5A-206ENST00000399233 12220 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
COL6A3P12111 AC092070.2-203ENST00000598377 3644 ntBASIC5.4□□□□□ -1.55
COL6A3P12111 SLIT3-202ENST00000404867 8903 ntTSL 5 BASIC5.4□□□□□ -1.55
COL6A3P12111 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.4□□□□□ -1.55
COL6A3P12111 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL6A3P12111 AC068446.1-201ENST00000556425 1549 ntBASIC5.4□□□□□ -1.55
COL6A3P12111 GBP4-201ENST00000355754 6127 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL6A3P12111 PDE4B-206ENST00000423207 4546 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL6A3P12111 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.39□□□□□ -1.55
COL6A3P12111 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A3P12111 DBIP1-201ENST00000401435 260 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC5.39□□□□□ -1.55
COL6A3P12111 AC093578.1-201ENST00000415219 368 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.39□□□□□ -1.55
COL6A3P12111 RNA5SP392-201ENST00000516905 112 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.39□□□□□ -1.55
COL6A3P12111 OR2BH1P-201ENST00000608850 864 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 AL450472.3-201ENST00000615578 367 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
COL6A3P12111 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A3P12111 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A3P12111 FP325330.3-201ENST00000623760 9537 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A3P12111 ZNF652P1-201ENST00000442420 1309 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 ABHD2-201ENST00000352732 8735 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A3P12111 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A3P12111 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A3P12111 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A3P12111 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 SNORA62.3-201ENST00000365110 153 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.39□□□□□ -1.55
COL6A3P12111 TANK-206ENST00000406287 875 ntTSL 5 BASIC5.39□□□□□ -1.55
COL6A3P12111 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.39□□□□□ -1.55
COL6A3P12111 YWHABP1-201ENST00000445359 727 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC5.39□□□□□ -1.55
COL6A3P12111 FBN2-208ENST00000619499 10154 ntTSL 5 BASIC5.39□□□□□ -1.55
COL6A3P12111 NEK1-206ENST00000510533 5377 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A3P12111 RUNX1T1-248ENST00000613302 7687 ntAPPRIS P3 TSL 5 BASIC5.39□□□□□ -1.55
COL6A3P12111 AC114774.1-201ENST00000507410 1770 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 CD34-201ENST00000310833 8246 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A3P12111 ZFHX2-202ENST00000419474 9182 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
COL6A3P12111 MIR105-1-201ENST00000385222 81 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC5.39□□□□□ -1.55
COL6A3P12111 AK3P5-201ENST00000432033 519 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
COL6A3P12111 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A3P12111 SLC25A14P1-201ENST00000502867 901 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 HNRNPRP2-201ENST00000528421 743 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 ZNF415P1-201ENST00000582279 1166 ntBASIC5.39□□□□□ -1.55
COL6A3P12111 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.39□□□□□ -1.55
COL6A3P12111 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.39□□□□□ -1.55
COL6A3P12111 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 ATP2B2-201ENST00000352432 8593 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 EYA4-201ENST00000355167 5692 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A3P12111 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A3P12111 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
COL6A3P12111 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A3P12111 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A3P12111 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 RNA5SP432-201ENST00000362480 116 ntBASIC5.38□□□□□ -1.55
COL6A3P12111 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.38□□□□□ -1.55
COL6A3P12111 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.38□□□□□ -1.55
COL6A3P12111 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.38□□□□□ -1.55
COL6A3P12111 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A3P12111 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.38□□□□□ -1.55
COL6A3P12111 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.38□□□□□ -1.55
COL6A3P12111 MIR3944-201ENST00000581277 108 ntBASIC5.38□□□□□ -1.55
COL6A3P12111 RPL7P50-201ENST00000600588 727 ntBASIC5.38□□□□□ -1.55
COL6A3P12111 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A3P12111 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms