Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 NIFKP3-201ENST00000417799 865 ntBASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 MYL12BP2-201ENST00000503948 512 ntBASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 CSNK1A1P3-201ENST00000504105 330 ntBASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AC020937.1-201ENST00000519677 1013 ntBASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AC009237.13-201ENST00000603193 276 ntBASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AL136131.3-201ENST00000607600 188 ntBASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AL096712.1-201ENST00000614561 159 ntBASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 TCP1P3-201ENST00000414406 1498 ntBASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AL078621.3-201ENST00000623707 2042 ntBASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AC093591.2-201ENST00000565254 3843 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AL138820.1-201ENST00000617901 5305 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 HSPD1P12-201ENST00000429127 1069 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 RPL7P56-201ENST00000429441 717 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 RPL7AP49-201ENST00000429522 581 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AL591438.1-201ENST00000433508 581 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AC016772.1-201ENST00000444170 1261 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 RBMY2AP-201ENST00000445405 1157 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AC097463.1-201ENST00000447288 481 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 RBMY2CP-201ENST00000448575 1157 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 RBMY2DP-202ENST00000448881 1157 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 RBMY2BP-202ENST00000451071 1156 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 GEMIN2P1-201ENST00000454246 752 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AZGP1P2-201ENST00000454506 345 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AC245028.2-201ENST00000458673 253 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 LSM3P4-201ENST00000502948 309 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AC093225.1-201ENST00000506867 1408 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AC016559.2-201ENST00000510759 359 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 GAPDHP71-201ENST00000511530 1003 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 TRIM51DP-201ENST00000529746 596 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AC018690.1-201ENST00000608144 626 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AC129778.1-202ENST00000623812 261 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AC103703.1-201ENST00000634783 663 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AL591379.1-207ENST00000635982 261 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC112Q8NEF3 AC068870.1-201ENST00000563737 2455 ntBASIC6.11□□□□□ -1.43
CCDC112Q8NEF3 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC112Q8NEF3 AP001157.1-201ENST00000550837 2339 ntBASIC6.11□□□□□ -1.43
CCDC112Q8NEF3 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC112Q8NEF3 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC112Q8NEF3 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC112Q8NEF3 AC025574.1-201ENST00000554784 1653 ntBASIC6.11□□□□□ -1.43
CCDC112Q8NEF3 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC112Q8NEF3 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC112Q8NEF3 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms