Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 MIR192-201ENST00000384915 110 ntBASIC8.29□□□□□ -1.08
SCAPERQ9BY12 RNA5SP251-201ENST00000410614 137 ntBASIC8.29□□□□□ -1.08
SCAPERQ9BY12 AL590139.1-201ENST00000416267 400 ntBASIC8.29□□□□□ -1.08
SCAPERQ9BY12 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC8.29□□□□□ -1.08
SCAPERQ9BY12 CSNK1A1P3-201ENST00000504105 330 ntBASIC8.29□□□□□ -1.08
SCAPERQ9BY12 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC8.29□□□□□ -1.08
SCAPERQ9BY12 MTND6P2-201ENST00000512226 524 ntBASIC8.29□□□□□ -1.08
SCAPERQ9BY12 RNA5SP373-201ENST00000517271 95 ntBASIC8.29□□□□□ -1.08
SCAPERQ9BY12 MIR7703-201ENST00000620784 77 ntBASIC8.29□□□□□ -1.08
SCAPERQ9BY12 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 HSPA8P14-201ENST00000552265 1805 ntBASIC8.28□□□□□ -1.08
SCAPERQ9BY12 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 AC010132.2-201ENST00000295493 1043 ntBASIC8.28□□□□□ -1.08
SCAPERQ9BY12 RNA5SP91-201ENST00000390902 119 ntBASIC8.28□□□□□ -1.08
SCAPERQ9BY12 AL009179.1-201ENST00000406085 265 ntBASIC8.28□□□□□ -1.08
SCAPERQ9BY12 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 AL596266.1-201ENST00000448132 400 ntBASIC8.28□□□□□ -1.08
SCAPERQ9BY12 AC009127.1-201ENST00000467090 155 ntBASIC8.28□□□□□ -1.08
SCAPERQ9BY12 RN7SL459P-201ENST00000481078 302 ntBASIC8.28□□□□□ -1.08
SCAPERQ9BY12 AC008897.1-201ENST00000494006 347 ntBASIC8.28□□□□□ -1.08
SCAPERQ9BY12 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 PRELID3BP5-201ENST00000508612 460 ntBASIC8.28□□□□□ -1.08
SCAPERQ9BY12 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC8.28□□□□□ -1.08
SCAPERQ9BY12 SUMO2P19-201ENST00000518920 295 ntBASIC8.28□□□□□ -1.08
SCAPERQ9BY12 AC005000.1-201ENST00000536192 288 ntBASIC8.28□□□□□ -1.08
SCAPERQ9BY12 MIR7641-1-201ENST00000627518 61 ntBASIC8.28□□□□□ -1.08
SCAPERQ9BY12 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC8.27□□□□□ -1.08
SCAPERQ9BY12 EPS15P1-202ENST00000459691 2071 ntBASIC8.27□□□□□ -1.08
SCAPERQ9BY12 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC8.27□□□□□ -1.08
SCAPERQ9BY12 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 CASC19-221ENST00000641309 1382 ntBASIC8.27□□□□□ -1.09
SCAPERQ9BY12 MT-RNR2-201ENST00000387347 1559 ntBASIC8.27□□□□□ -1.09
SCAPERQ9BY12 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 TEX41-205ENST00000431734 529 ntTSL 4 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 AC092647.2-201ENST00000452998 253 ntBASIC8.27□□□□□ -1.09
SCAPERQ9BY12 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 OSTCP1-201ENST00000455507 450 ntBASIC8.27□□□□□ -1.09
SCAPERQ9BY12 RPS7P6-201ENST00000485777 579 ntBASIC8.27□□□□□ -1.09
SCAPERQ9BY12 SCARNA16.4-201ENST00000516956 187 ntBASIC8.27□□□□□ -1.09
SCAPERQ9BY12 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 DHFRP1-201ENST00000579682 559 ntBASIC8.27□□□□□ -1.09
SCAPERQ9BY12 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC8.27□□□□□ -1.09
SCAPERQ9BY12 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 VN1R21P-201ENST00000426703 765 ntBASIC8.26□□□□□ -1.09
SCAPERQ9BY12 AL606490.8-201ENST00000441624 319 ntBASIC8.26□□□□□ -1.09
SCAPERQ9BY12 DUBR-205ENST00000495228 411 ntTSL 2 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 RNA5SP116-201ENST00000516132 98 ntBASIC8.26□□□□□ -1.09
SCAPERQ9BY12 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 AL133406.3-201ENST00000606817 541 ntBASIC8.26□□□□□ -1.09
SCAPERQ9BY12 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC8.26□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms