Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A3P12111 COL4A6-202ENST00000372216 6570 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A3P12111 SMG1P7-201ENST00000565246 2704 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A3P12111 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A3P12111 IL6ST-206ENST00000381298 9057 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A3P12111 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.45□□□□□ -1.54
COL6A3P12111 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.45□□□□□ -1.54
COL6A3P12111 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC5.45□□□□□ -1.54
COL6A3P12111 AC114814.2-201ENST00000419195 485 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 FHP1-201ENST00000442741 703 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 RPL7P19-201ENST00000469948 618 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 AC012339.2-201ENST00000523996 453 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC5.45□□□□□ -1.54
COL6A3P12111 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A3P12111 SLITRK1-201ENST00000377084 5189 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
COL6A3P12111 AL731566.1-201ENST00000620490 1937 ntBASIC5.44□□□□□ -1.54
COL6A3P12111 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.44□□□□□ -1.54
COL6A3P12111 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
COL6A3P12111 PARP4P1-201ENST00000435945 2337 ntBASIC5.44□□□□□ -1.54
COL6A3P12111 THSD7B-203ENST00000413152 5846 ntTSL 5 BASIC5.44□□□□□ -1.54
COL6A3P12111 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A3P12111 SAMMSON-226ENST00000642089 1582 ntBASIC5.44□□□□□ -1.54
COL6A3P12111 STXBP5-204ENST00000367481 9177 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A3P12111 RSU1P3-201ENST00000412878 835 ntBASIC5.44□□□□□ -1.54
COL6A3P12111 RSU1P1-201ENST00000453416 441 ntBASIC5.44□□□□□ -1.54
COL6A3P12111 FPGT-203ENST00000467578 601 ntTSL 2 BASIC5.44□□□□□ -1.54
COL6A3P12111 AL133372.1-201ENST00000493565 745 ntBASIC5.44□□□□□ -1.54
COL6A3P12111 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A3P12111 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.44□□□□□ -1.54
COL6A3P12111 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A3P12111 AC005034.3-201ENST00000604845 1747 ntBASIC5.44□□□□□ -1.54
COL6A3P12111 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
COL6A3P12111 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.44□□□□□ -1.54
COL6A3P12111 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A3P12111 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC5.44□□□□□ -1.54
COL6A3P12111 PRICKLE2-204ENST00000564377 8032 ntAPPRIS P2 TSL 5 BASIC5.44□□□□□ -1.54
COL6A3P12111 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
COL6A3P12111 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A3P12111 MIR483-201ENST00000385070 76 ntBASIC5.44□□□□□ -1.54
COL6A3P12111 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.44□□□□□ -1.54
COL6A3P12111 AL596266.1-201ENST00000448132 400 ntBASIC5.44□□□□□ -1.54
COL6A3P12111 RN7SL165P-201ENST00000477476 291 ntBASIC5.44□□□□□ -1.54
COL6A3P12111 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC5.44□□□□□ -1.54
COL6A3P12111 MIR3138-201ENST00000585238 82 ntBASIC5.44□□□□□ -1.54
COL6A3P12111 MALAT1-212ENST00000618132 725 ntTSL 2 BASIC5.44□□□□□ -1.54
COL6A3P12111 AC012254.5-201ENST00000623573 478 ntBASIC5.44□□□□□ -1.54
COL6A3P12111 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A3P12111 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC5.44□□□□□ -1.54
COL6A3P12111 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.44□□□□□ -1.54
COL6A3P12111 CACNA1C-225ENST00000480911 6811 ntTSL 5 BASIC5.44□□□□□ -1.54
COL6A3P12111 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A3P12111 MYO5A-205ENST00000399231 12225 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A3P12111 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 ICA1L-202ENST00000392237 5173 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC5.43□□□□□ -1.54
COL6A3P12111 OR2A1-202ENST00000641044 4632 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
COL6A3P12111 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 USP6-205ENST00000574788 8464 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 COL6A6-201ENST00000358511 9581 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
COL6A3P12111 AL590762.2-201ENST00000395798 571 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 RN7SKP177-201ENST00000410567 355 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.43□□□□□ -1.54
COL6A3P12111 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC5.43□□□□□ -1.54
COL6A3P12111 OR13K1P-201ENST00000444577 975 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.43□□□□□ -1.54
COL6A3P12111 CEACAMP6-201ENST00000452007 574 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.43□□□□□ -1.54
COL6A3P12111 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.43□□□□□ -1.54
COL6A3P12111 CCNG2P1-201ENST00000549521 1000 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC5.43□□□□□ -1.54
COL6A3P12111 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.43□□□□□ -1.54
COL6A3P12111 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 ABCA8-203ENST00000430352 5823 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.43□□□□□ -1.54
COL6A3P12111 LRRC2-202ENST00000395905 5100 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 AC099654.2-201ENST00000433031 1980 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.43□□□□□ -1.54
COL6A3P12111 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
COL6A3P12111 CENPC-201ENST00000273853 6940 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 SCN9A-203ENST00000409672 9768 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
COL6A3P12111 GIT2-203ENST00000355312 5466 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
COL6A3P12111 PDSS1P1-201ENST00000422953 1114 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC5.43□□□□□ -1.54
COL6A3P12111 AC106782.4-201ENST00000568264 210 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 AL353626.1-201ENST00000613429 507 ntTSL 5 BASIC5.43□□□□□ -1.54
COL6A3P12111 AC002044.3-201ENST00000623314 541 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 DRP2-202ENST00000395209 7277 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 USP9YP3-201ENST00000434481 1766 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
COL6A3P12111 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.43□□□□□ -1.54
COL6A3P12111 RBM33-207ENST00000401878 10149 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
COL6A3P12111 DOCK3-201ENST00000266037 8755 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 AC022164.1-201ENST00000568767 2673 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC5.43□□□□□ -1.54
COL6A3P12111 SCARNA10-201ENST00000459255 330 ntBASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms