Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
SOX4Q06945 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC7.18□□□□□ -1.26
SOX4Q06945 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC7.18□□□□□ -1.26
SOX4Q06945 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC7.18□□□□□ -1.26
SOX4Q06945 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SOX4Q06945 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC7.18□□□□□ -1.26
SOX4Q06945 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SOX4Q06945 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC7.18□□□□□ -1.26
SOX4Q06945 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SOX4Q06945 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SOX4Q06945 NACA3P-201ENST00000359690 648 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 RNA5SP65-201ENST00000363166 119 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 Y_RNA.359-201ENST00000365498 102 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC7.18□□□□□ -1.26
SOX4Q06945 snosnR66.1-201ENST00000391095 99 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 HMGB1P10-201ENST00000395823 563 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC7.18□□□□□ -1.26
SOX4Q06945 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC7.18□□□□□ -1.26
SOX4Q06945 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC7.18□□□□□ -1.26
SOX4Q06945 RPS7P12-201ENST00000422385 582 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC7.18□□□□□ -1.26
SOX4Q06945 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC7.18□□□□□ -1.26
SOX4Q06945 LAPTM4BP1-201ENST00000447781 690 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC7.18□□□□□ -1.26
SOX4Q06945 CFTRP1-201ENST00000456646 183 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 RN7SL834P-201ENST00000461450 286 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 AC126182.1-201ENST00000478134 357 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC7.18□□□□□ -1.26
SOX4Q06945 RN7SKP183-201ENST00000517169 324 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 HIGD1AP18-201ENST00000520730 278 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC7.18□□□□□ -1.26
SOX4Q06945 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC7.18□□□□□ -1.26
SOX4Q06945 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC7.18□□□□□ -1.26
SOX4Q06945 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC7.18□□□□□ -1.26
SOX4Q06945 RPS3AP4-201ENST00000555161 764 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC7.18□□□□□ -1.26
SOX4Q06945 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC7.18□□□□□ -1.26
SOX4Q06945 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC7.18□□□□□ -1.26
SOX4Q06945 AC012254.4-201ENST00000588843 273 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC7.18□□□□□ -1.26
SOX4Q06945 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC7.18□□□□□ -1.26
SOX4Q06945 AC114477.1-201ENST00000605097 605 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 AC128687.1-201ENST00000605304 619 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 AC091768.1-201ENST00000609258 930 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC7.18□□□□□ -1.26
SOX4Q06945 AL354718.1-201ENST00000619764 589 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC7.18□□□□□ -1.26
SOX4Q06945 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC7.18□□□□□ -1.26
SOX4Q06945 AC131009.3-201ENST00000621809 287 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC7.18□□□□□ -1.26
SOX4Q06945 5S_rRNA.29-201ENST00000641250 107 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC7.18□□□□□ -1.26
SOX4Q06945 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC7.18□□□□□ -1.26
SOX4Q06945 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SOX4Q06945 AC087430.1-201ENST00000451707 3699 ntTSL 2 BASIC7.18□□□□□ -1.26
SOX4Q06945 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SOX4Q06945 OR10AB1P-202ENST00000641219 1686 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC7.18□□□□□ -1.26
SOX4Q06945 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SOX4Q06945 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC7.18□□□□□ -1.26
SOX4Q06945 AC007993.1-201ENST00000621298 2430 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC7.18□□□□□ -1.26
SOX4Q06945 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC7.18□□□□□ -1.26
SOX4Q06945 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
SOX4Q06945 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
SOX4Q06945 AC104581.5-201ENST00000624171 7141 ntBASIC7.18□□□□□ -1.26
SOX4Q06945 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SOX4Q06945 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
SOX4Q06945 AC020658.2-201ENST00000559030 4020 ntBASIC7.17□□□□□ -1.26
SOX4Q06945 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SOX4Q06945 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC7.17□□□□□ -1.26
SOX4Q06945 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SOX4Q06945 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC7.17□□□□□ -1.26
SOX4Q06945 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC7.17□□□□□ -1.26
SOX4Q06945 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
SOX4Q06945 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SOX4Q06945 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SOX4Q06945 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
SOX4Q06945 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC7.17□□□□□ -1.26
SOX4Q06945 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SOX4Q06945 SNORA38B-201ENST00000363524 131 ntBASIC7.17□□□□□ -1.26
SOX4Q06945 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
SOX4Q06945 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC7.17□□□□□ -1.26
SOX4Q06945 ATP5F1P4-201ENST00000397288 746 ntBASIC7.17□□□□□ -1.26
SOX4Q06945 RN7SKP142-201ENST00000411236 328 ntBASIC7.17□□□□□ -1.26
SOX4Q06945 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC7.17□□□□□ -1.26
SOX4Q06945 MRPS21P5-201ENST00000417885 231 ntBASIC7.17□□□□□ -1.26
SOX4Q06945 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC7.17□□□□□ -1.26
SOX4Q06945 DUTP4-201ENST00000424782 475 ntBASIC7.17□□□□□ -1.26
SOX4Q06945 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
SOX4Q06945 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC7.17□□□□□ -1.26
SOX4Q06945 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SOX4Q06945 HSD52-202ENST00000436225 772 ntTSL 3 BASIC7.17□□□□□ -1.26
SOX4Q06945 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC7.17□□□□□ -1.26
SOX4Q06945 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC7.17□□□□□ -1.26
SOX4Q06945 AC234771.2-201ENST00000445718 597 ntBASIC7.17□□□□□ -1.26
SOX4Q06945 HMGB1P48-201ENST00000446155 598 ntBASIC7.17□□□□□ -1.26
SOX4Q06945 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SOX4Q06945 AL020997.1-201ENST00000446554 349 ntBASIC7.17□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms