Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC7.28□□□□□ -1.24
HOXC9P31274 TANK-205ENST00000405852 2155 ntTSL 5 BASIC7.27□□□□□ -1.24
HOXC9P31274 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
HOXC9P31274 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
HOXC9P31274 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC7.27□□□□□ -1.25
HOXC9P31274 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC7.27□□□□□ -1.25
HOXC9P31274 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC7.27□□□□□ -1.25
HOXC9P31274 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
HOXC9P31274 RNA5SP487-201ENST00000410186 122 ntBASIC7.27□□□□□ -1.25
HOXC9P31274 RPS23P9-201ENST00000448848 438 ntBASIC7.27□□□□□ -1.25
HOXC9P31274 EIF4EBP2P1-201ENST00000450009 343 ntBASIC7.27□□□□□ -1.25
HOXC9P31274 AC090114.3-201ENST00000479267 829 ntBASIC7.27□□□□□ -1.25
HOXC9P31274 AC109462.1-201ENST00000491087 368 ntBASIC7.27□□□□□ -1.25
HOXC9P31274 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
HOXC9P31274 BMPR1APS2-201ENST00000527904 1012 ntBASIC7.27□□□□□ -1.25
HOXC9P31274 ASB8-202ENST00000535055 657 ntTSL 2 BASIC7.27□□□□□ -1.25
HOXC9P31274 MIR4646-201ENST00000580775 63 ntBASIC7.27□□□□□ -1.25
HOXC9P31274 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC7.27□□□□□ -1.25
HOXC9P31274 AC131971.1-201ENST00000332881 1482 ntBASIC7.27□□□□□ -1.25
HOXC9P31274 HSPD1P7-201ENST00000447985 1686 ntBASIC7.27□□□□□ -1.25
HOXC9P31274 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
HOXC9P31274 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC7.27□□□□□ -1.25
HOXC9P31274 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
HOXC9P31274 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
HOXC9P31274 AL731532.1-201ENST00000623972 4236 ntBASIC7.27□□□□□ -1.25
HOXC9P31274 AC018809.2-201ENST00000602436 3823 ntBASIC7.27□□□□□ -1.25
HOXC9P31274 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC7.27□□□□□ -1.25
HOXC9P31274 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC7.27□□□□□ -1.25
HOXC9P31274 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC7.27□□□□□ -1.25
HOXC9P31274 Z82209.2-201ENST00000623410 2012 ntBASIC7.27□□□□□ -1.25
HOXC9P31274 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
HOXC9P31274 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
HOXC9P31274 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
HOXC9P31274 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC7.26□□□□□ -1.25
HOXC9P31274 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC7.26□□□□□ -1.25
HOXC9P31274 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC7.26□□□□□ -1.25
HOXC9P31274 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
HOXC9P31274 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC7.26□□□□□ -1.25
HOXC9P31274 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
HOXC9P31274 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
HOXC9P31274 RNU6ATAC21P-201ENST00000408656 126 ntBASIC7.26□□□□□ -1.25
HOXC9P31274 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC7.26□□□□□ -1.25
HOXC9P31274 GAPDHP25-201ENST00000447061 1001 ntBASIC7.26□□□□□ -1.25
HOXC9P31274 NDUFB5P1-201ENST00000508134 564 ntBASIC7.26□□□□□ -1.25
HOXC9P31274 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC7.26□□□□□ -1.25
HOXC9P31274 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC7.26□□□□□ -1.25
HOXC9P31274 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC7.26□□□□□ -1.25
HOXC9P31274 AC009163.6-201ENST00000612367 342 ntBASIC7.26□□□□□ -1.25
HOXC9P31274 AP002799.1-201ENST00000623552 423 ntBASIC7.26□□□□□ -1.25
HOXC9P31274 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
HOXC9P31274 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC7.26□□□□□ -1.25
HOXC9P31274 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
HOXC9P31274 HSPA8P18-201ENST00000439846 1928 ntBASIC7.26□□□□□ -1.25
HOXC9P31274 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC7.26□□□□□ -1.25
HOXC9P31274 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
HOXC9P31274 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
HOXC9P31274 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC7.25□□□□□ -1.25
HOXC9P31274 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
HOXC9P31274 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
HOXC9P31274 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC7.25□□□□□ -1.25
HOXC9P31274 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
HOXC9P31274 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC7.25□□□□□ -1.25
HOXC9P31274 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC7.25□□□□□ -1.25
HOXC9P31274 EEF1A1P33-201ENST00000554413 1362 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 SNORA17.1-201ENST00000362945 126 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
HOXC9P31274 RPL11P3-201ENST00000395256 523 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 AL451063.1-201ENST00000450164 1133 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 AZGP1P2-201ENST00000454506 345 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC7.25□□□□□ -1.25
HOXC9P31274 PDCL3P4-201ENST00000489621 720 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 RPS17P5-201ENST00000498293 408 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 AP000676.2-201ENST00000529711 301 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 OR5AM1P-201ENST00000532136 1032 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC7.25□□□□□ -1.25
HOXC9P31274 AC016252.1-201ENST00000609721 474 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 AL049539.1-201ENST00000611964 459 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 AC074101.1-201ENST00000637861 241 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
HOXC9P31274 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
HOXC9P31274 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC7.25□□□□□ -1.25
HOXC9P31274 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
HOXC9P31274 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
HOXC9P31274 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC7.25□□□□□ -1.25
HOXC9P31274 AC144833.1-201ENST00000567953 4089 ntBASIC7.25□□□□□ -1.25
HOXC9P31274 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
HOXC9P31274 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
HOXC9P31274 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HOXC9P31274 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC7.24□□□□□ -1.25
HOXC9P31274 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HOXC9P31274 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HOXC9P31274 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC7.24□□□□□ -1.25
HOXC9P31274 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HOXC9P31274 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
HOXC9P31274 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
HOXC9P31274 RNA5SP443-201ENST00000363083 132 ntBASIC7.24□□□□□ -1.25
HOXC9P31274 RNU1-59P-201ENST00000364829 162 ntBASIC7.24□□□□□ -1.25
HOXC9P31274 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC7.24□□□□□ -1.25
HOXC9P31274 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC7.24□□□□□ -1.25
HOXC9P31274 AP000769.2-201ENST00000602344 396 ntBASIC7.24□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms