Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MAP3K20-208ENST00000539448 2312 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 EEF1A1P12-201ENST00000443590 1346 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 CFAP47-201ENST00000297866 3608 ntTSL 2 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 ZNF331-216ENST00000511593 1985 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 IL13RA2-202ENST00000371936 1498 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 NEDD1-201ENST00000266742 4046 ntAPPRIS P1 TSL 2 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 TPPP2-201ENST00000321760 752 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 Y_RNA.25-201ENST00000362528 102 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 RNA5SP429-201ENST00000363688 109 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 CUBN-201ENST00000377823 705 ntTSL 3 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 RPS3AP9-201ENST00000417027 792 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 FDPSP1-201ENST00000424976 1071 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 CHCHD3P1-201ENST00000425516 676 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 BX890604.2-201ENST00000427883 474 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 PCBP2P1-201ENST00000437262 977 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 PCNPP2-201ENST00000441651 455 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 ACTR3P3-201ENST00000480448 893 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 RPS3AP14-201ENST00000483907 780 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 ZNF721-203ENST00000506646 935 ntTSL 2 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 IMPA1P1-201ENST00000510718 842 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 TRAV15-201ENST00000556680 249 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AC025678.1-201ENST00000567861 338 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AC093074.1-201ENST00000590280 556 ntTSL 4 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 ACP5-208ENST00000590420 301 ntTSL 5 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AC006116.6-201ENST00000593258 1103 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 XIST-210ENST00000602863 775 ntTSL 3 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AC069304.2-201ENST00000605154 435 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 RNVU1-19-201ENST00000613023 167 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 IGKV1OR1-1-201ENST00000613775 347 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AC023509.5-201ENST00000617434 807 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 AC068880.5-201ENST00000624331 290 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 MIR3662-201ENST00000637030 95 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 FHL1-206ENST00000394153 2374 ntTSL 5 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 ASAH1-203ENST00000381733 2512 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 ZNF234-201ENST00000426739 4551 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 HCP5-201ENST00000414046 2658 ntTSL 4 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 LINC01105-204ENST00000444416 2695 ntTSL 2 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 PARP4P1-201ENST00000435945 2337 ntBASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 PTPRR-203ENST00000378778 2632 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 DDX24-205ENST00000555054 2769 ntTSL 5 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 IL5RA-206ENST00000430514 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 RAD51B-211ENST00000487861 1673 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 ZNF585B-203ENST00000527838 2732 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 TMPPE-202ENST00000416695 3451 ntAPPRIS ALT2 TSL 2 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC8.08□□□□□ -1.12
LIMD1Q9UGP4 TP63-201ENST00000264731 4909 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 TRPS1-209ENST00000519674 3116 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 CHODL-203ENST00000400127 2239 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 TMEM99-204ENST00000622451 2073 ntAPPRIS P2 TSL 2 BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 WASF5P-205ENST00000428639 1455 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 BAAT-201ENST00000259407 3377 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 ACSL1-211ENST00000515030 3948 ntAPPRIS P3 TSL 5 BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 PCBD2-204ENST00000512783 5621 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 TRIM53BP-201ENST00000532912 1720 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 LINC00598-208ENST00000617777 2551 ntTSL 2 BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 WBP1L-201ENST00000369889 4107 ntAPPRIS P3 TSL 1 (best) BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 RNU6-1085P-201ENST00000363576 107 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 ARMCX7P-201ENST00000372828 562 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 AL450124.1-201ENST00000376401 353 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 SOD1P1-201ENST00000407803 440 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 AL451061.1-201ENST00000407887 862 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 SNORA11D-201ENST00000408548 128 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 MIR1303-201ENST00000408625 86 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 SNORA11E-201ENST00000408778 128 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 RN7SKP129-201ENST00000410288 299 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 RN7SKP127-201ENST00000410443 354 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 AC006455.4-201ENST00000418297 528 ntTSL 4 BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 NIPA2P1-201ENST00000426223 976 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 SKP1P1-201ENST00000438081 489 ntBASIC8.07□□□□□ -1.12
LIMD1Q9UGP4 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms