Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 NIFKP3-201ENST00000417799 865 ntBASIC5.7□□□□□ -1.5
VPS35Q96QK1 AC013268.2-201ENST00000420753 337 ntBASIC5.7□□□□□ -1.5
VPS35Q96QK1 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 UBFD1P1-201ENST00000473259 814 ntBASIC5.7□□□□□ -1.5
VPS35Q96QK1 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VPS35Q96QK1 AC073610.1-201ENST00000489971 396 ntBASIC5.7□□□□□ -1.5
VPS35Q96QK1 RPS26P24-201ENST00000497656 331 ntBASIC5.7□□□□□ -1.5
VPS35Q96QK1 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 AC021678.3-201ENST00000517893 476 ntBASIC5.7□□□□□ -1.5
VPS35Q96QK1 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 DPPA2P4-201ENST00000563717 878 ntBASIC5.7□□□□□ -1.5
VPS35Q96QK1 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS35Q96QK1 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS35Q96QK1 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS35Q96QK1 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
VPS35Q96QK1 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VPS35Q96QK1 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS35Q96QK1 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS35Q96QK1 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS35Q96QK1 AL158152.1-201ENST00000602652 1435 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS35Q96QK1 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 AL590399.2-201ENST00000427536 309 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 HMGB3P24-201ENST00000433260 622 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 RPS23P2-201ENST00000463671 415 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 RPS23P6-201ENST00000466136 431 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 RPSAP37-201ENST00000470913 821 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS35Q96QK1 RPL32P33-201ENST00000487023 394 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 PDCL3P4-201ENST00000489621 720 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 HMGB1P42-201ENST00000532126 553 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 IGBP1P1-201ENST00000554337 1009 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 AL513327.3-201ENST00000602618 469 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 AC006363.1-201ENST00000603806 463 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 AC000095.2-202ENST00000637415 154 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 AC138627.1-204ENST00000641894 765 ntBASIC5.69□□□□□ -1.5
VPS35Q96QK1 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS35Q96QK1 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS35Q96QK1 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS35Q96QK1 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.69□□□□□ -1.5
VPS35Q96QK1 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS35Q96QK1 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS35Q96QK1 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS35Q96QK1 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.68□□□□□ -1.5
VPS35Q96QK1 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS35Q96QK1 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS35Q96QK1 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS35Q96QK1 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
VPS35Q96QK1 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
VPS35Q96QK1 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS35Q96QK1 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS35Q96QK1 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS35Q96QK1 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC5.68□□□□□ -1.5
VPS35Q96QK1 RNA5SP394-201ENST00000364216 119 ntBASIC5.68□□□□□ -1.5
VPS35Q96QK1 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS35Q96QK1 MIR130A-201ENST00000385274 89 ntBASIC5.68□□□□□ -1.5
VPS35Q96QK1 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
VPS35Q96QK1 RNA5SP91-201ENST00000390902 119 ntBASIC5.68□□□□□ -1.5
VPS35Q96QK1 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.68□□□□□ -1.5
VPS35Q96QK1 HMGB1P20-201ENST00000402555 677 ntBASIC5.68□□□□□ -1.5
VPS35Q96QK1 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS35Q96QK1 CDY17P-201ENST00000414121 1282 ntBASIC5.68□□□□□ -1.5
VPS35Q96QK1 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.68□□□□□ -1.5
VPS35Q96QK1 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.68□□□□□ -1.5
VPS35Q96QK1 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms