Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC107222.1-201ENST00000510899 637 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 NPM1P41-201ENST00000512920 831 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 AC011352.2-201ENST00000514574 1016 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC8.31□□□□□ -1.08
COL9A1P20849 COX6B1P4-201ENST00000519826 484 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 SNX18P27-201ENST00000523611 779 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 LRP1-AS-201ENST00000554476 325 ntTSL 3 BASIC8.31□□□□□ -1.08
COL9A1P20849 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC8.31□□□□□ -1.08
COL9A1P20849 AC020908.2-201ENST00000595134 405 ntTSL 2 BASIC8.31□□□□□ -1.08
COL9A1P20849 OR7E94P-202ENST00000601375 790 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 AC013244.1-201ENST00000604279 193 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 AC115621.1-201ENST00000604653 858 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 PACRG-211ENST00000621363 360 ntTSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 MIR1910-201ENST00000636955 80 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 DDX3Y-202ENST00000360160 2709 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 ZEB2-201ENST00000303660 3913 ntAPPRIS ALT1 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 ATF7-202ENST00000456903 5218 ntAPPRIS P2 TSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 CLIP1-214ENST00000540539 2592 ntTSL 2 BASIC8.31□□□□□ -1.08
COL9A1P20849 MTND5P27-201ENST00000428871 1720 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 LINC01924-201ENST00000589376 1722 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 ZKSCAN5-203ENST00000451158 3111 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 TFIP11-217ENST00000619735 3402 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 GPM6A-202ENST00000393658 2821 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 CIT-201ENST00000261833 8578 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 ADD2-204ENST00000407644 3741 ntAPPRIS P4 TSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 GLDCP1-201ENST00000510885 2678 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 DBF4P1-201ENST00000412976 1892 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 OAT-208ENST00000539214 1864 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 C1QTNF7-204ENST00000429690 4464 ntAPPRIS P1 TSL 4 BASIC8.3□□□□□ -1.08
COL9A1P20849 VSIG1-202ENST00000415430 3236 ntAPPRIS ALT2 TSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 NRG3-204ENST00000404576 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 GIGYF2-203ENST00000409451 5937 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 ADGRG6-201ENST00000230173 7026 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC8.3□□□□□ -1.08
COL9A1P20849 AL137145.2-201ENST00000399868 3086 ntTSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 PPP4R1L-202ENST00000334187 2746 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 Y_RNA.187-201ENST00000363918 113 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
COL9A1P20849 CNN3P1-201ENST00000401596 935 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 RPL21P107-201ENST00000411449 460 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC8.3□□□□□ -1.08
COL9A1P20849 AL451054.2-201ENST00000420896 202 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC8.3□□□□□ -1.08
COL9A1P20849 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC8.3□□□□□ -1.08
COL9A1P20849 GOT2P2-201ENST00000450663 1251 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 Y_RNA.635-201ENST00000459041 101 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 RN7SL251P-201ENST00000464175 297 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC8.3□□□□□ -1.08
COL9A1P20849 AC084878.1-201ENST00000480555 648 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 HMGB1P30-201ENST00000492455 606 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC8.3□□□□□ -1.08
COL9A1P20849 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC8.3□□□□□ -1.08
COL9A1P20849 AC078860.1-201ENST00000546601 527 ntTSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 AL049780.1-201ENST00000554430 489 ntTSL 3 BASIC8.3□□□□□ -1.08
COL9A1P20849 TRAV15-201ENST00000556680 249 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 AC026464.5-201ENST00000562497 722 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 MIR4680-201ENST00000580906 66 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 MIR544B-201ENST00000582372 78 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 MIR3663-201ENST00000583207 97 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 AC005014.2-201ENST00000607795 599 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 AC090510.2-201ENST00000617465 629 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC8.3□□□□□ -1.08
COL9A1P20849 GAS2-210ENST00000630668 674 ntTSL 5 BASIC8.3□□□□□ -1.08
COL9A1P20849 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC8.3□□□□□ -1.08
COL9A1P20849 LIN9-205ENST00000481685 1916 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 IGSF1-205ENST00000370904 5413 ntAPPRIS ALT2 TSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 FASTKD2-202ENST00000402774 2586 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 PPP1R3B-201ENST00000310455 5548 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 SORBS2-209ENST00000418609 5529 ntTSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 EFHC1-226ENST00000636954 2129 ntTSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC8.3□□□□□ -1.08
COL9A1P20849 MLYCD-201ENST00000262430 13038 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 OR9I1-202ENST00000641439 3184 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
COL9A1P20849 OTOA-201ENST00000286149 3471 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
COL9A1P20849 RHOBTB1-202ENST00000357917 4339 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 CD200-202ENST00000383681 1997 ntTSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 ZNF345-202ENST00000420450 1971 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 AC079777.1-201ENST00000623836 1953 ntBASIC8.3□□□□□ -1.08
COL9A1P20849 HELQ-201ENST00000295488 3579 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
COL9A1P20849 FAM196A-202ENST00000522781 4403 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 MUC20-204ENST00000445522 2842 ntAPPRIS ALT2 TSL 2 BASIC8.3□□□□□ -1.08
COL9A1P20849 AMPH-201ENST00000325590 3145 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 TPD52-204ENST00000517427 2596 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 LACTB2-AS1-201ENST00000499227 3716 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 NUTM1-202ENST00000438749 3922 ntAPPRIS ALT2 TSL 2 BASIC8.29□□□□□ -1.08
COL9A1P20849 ITIH2-201ENST00000358415 3193 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC8.29□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms