Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 AC025750.1-201ENST00000399891 379 ntBASIC5.25□□□□□ -1.57
VPS13AQ96RL7 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 RPL7P32-201ENST00000457119 744 ntBASIC5.25□□□□□ -1.57
VPS13AQ96RL7 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 CYP4F27P-201ENST00000514557 494 ntBASIC5.25□□□□□ -1.57
VPS13AQ96RL7 IGKV1-32-201ENST00000519290 311 ntBASIC5.25□□□□□ -1.57
VPS13AQ96RL7 AC009643.1-201ENST00000532030 391 ntBASIC5.25□□□□□ -1.57
VPS13AQ96RL7 OR5AM1P-201ENST00000532136 1032 ntBASIC5.25□□□□□ -1.57
VPS13AQ96RL7 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 RN7SL356P-201ENST00000582228 248 ntBASIC5.25□□□□□ -1.57
VPS13AQ96RL7 AC067931.1-201ENST00000624190 671 ntBASIC5.25□□□□□ -1.57
VPS13AQ96RL7 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS13AQ96RL7 RNA5SP487-201ENST00000410186 122 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 PPIAP21-201ENST00000464473 501 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 CR383656.1-201ENST00000484916 377 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AC011005.3-201ENST00000491624 395 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 TRPM7-207ENST00000560955 7218 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 LTBP1-207ENST00000418533 5164 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 CHEK2P3-201ENST00000416118 248 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AC006946.1-201ENST00000429106 328 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 HSPD1P12-201ENST00000429127 1069 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AC090424.1-201ENST00000535243 736 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 CCDC58P3-201ENST00000590792 430 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AL034374.2-201ENST00000605281 548 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 NANOGP3-201ENST00000605855 286 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AC024941.1-201ENST00000612250 334 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AC116631.1-202ENST00000640984 683 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 PCDH19-201ENST00000255531 7937 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 PCDH19-203ENST00000420881 7936 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 DRP2-203ENST00000402866 7018 ntAPPRIS P3 TSL 5 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 NAV2-213ENST00000533917 5084 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 PLEKHA5-213ENST00000538714 6487 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AC009948.5-201ENST00000624360 4406 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AC015977.1-201ENST00000418887 292 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AC021483.2-201ENST00000567415 758 ntBASIC5.24□□□□□ -1.57
VPS13AQ96RL7 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 PTPRB-204ENST00000538708 5839 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS13AQ96RL7 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AC105046.1-201ENST00000566457 4997 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 PAICS-207ENST00000512576 6480 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AL050305.1-201ENST00000399993 1230 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AC023141.6-201ENST00000429418 337 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AC005154.2-201ENST00000438110 379 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 NPM1P33-201ENST00000438918 872 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AL596266.1-201ENST00000448132 400 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AURKAPS2-201ENST00000454983 333 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 OR8G5-201ENST00000524943 1041 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 NPM1P42-201ENST00000560329 862 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AC093765.1-201ENST00000603758 881 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 DBIP1-201ENST00000401435 260 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms