Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 GCSHP4-201ENST00000538792 439 ntBASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 NANOGP3-201ENST00000605855 286 ntBASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 AC010857.1-201ENST00000606398 594 ntBASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 AL356752.1-201ENST00000615844 593 ntBASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 SCYL3-202ENST00000367771 6364 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC3.71□□□□□ -1.82
ALMS1Q8TCU4 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 RNA5SP91-201ENST00000390902 119 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 RNA5SP487-201ENST00000410186 122 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AL138878.2-201ENST00000440581 1241 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AC103987.1-201ENST00000473394 348 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 MTND6P2-201ENST00000512226 524 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 SNORA70.11-201ENST00000515987 138 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 SNORA70.13-201ENST00000516116 138 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 SS18L2P2-201ENST00000583960 235 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AL512782.1-201ENST00000603093 364 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 SPATA31C1-201ENST00000420021 3895 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 LINC01616-201ENST00000561816 2280 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 RPS27AP7-201ENST00000422792 455 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 CHIAP3-201ENST00000423668 1133 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 PRPF38AP2-201ENST00000438179 851 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 RN7SL352P-201ENST00000466002 277 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 SLC25A51P1-201ENST00000468432 871 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 TPM3P3-201ENST00000521343 354 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 DERA-209ENST00000532964 854 ntTSL 5 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 OR4A6P-201ENST00000534364 970 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AC012414.7-202ENST00000622705 1090 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 TLN2-211ENST00000636159 7441 ntTSL 5 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 MFSD8-218ENST00000641186 4448 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 RNU1-146P-201ENST00000364015 165 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AC012512.1-201ENST00000446594 718 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 TPT1P13-201ENST00000449760 499 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 NDUFA12P1-201ENST00000455914 406 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 RN7SKP99-201ENST00000517028 307 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AC090424.1-201ENST00000535243 736 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 MIR4691-201ENST00000583764 85 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AC112694.2-201ENST00000623697 768 ntBASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 MITF-203ENST00000328528 4680 ntTSL 5 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
ALMS1Q8TCU4 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms