Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC125494.2-201ENST00000602431 657 ntBASIC3.29□□□□□ -1.88
HSPG2P98160 AC011944.2-201ENST00000624440 683 ntBASIC3.29□□□□□ -1.88
HSPG2P98160 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
HSPG2P98160 ZBTB44-205ENST00000525842 9315 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 PDE4DIP-219ENST00000524974 8305 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
HSPG2P98160 DCP2-208ENST00000515408 8029 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
HSPG2P98160 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 HIP1-201ENST00000336926 8013 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC3.29□□□□□ -1.88
HSPG2P98160 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC3.29□□□□□ -1.88
HSPG2P98160 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.29□□□□□ -1.88
HSPG2P98160 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
HSPG2P98160 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC3.29□□□□□ -1.88
HSPG2P98160 GAPDHP25-201ENST00000447061 1001 ntBASIC3.29□□□□□ -1.88
HSPG2P98160 OR52J1P-201ENST00000450596 932 ntBASIC3.29□□□□□ -1.88
HSPG2P98160 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC3.29□□□□□ -1.88
HSPG2P98160 RN7SKP253-201ENST00000516424 309 ntBASIC3.29□□□□□ -1.88
HSPG2P98160 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC3.29□□□□□ -1.88
HSPG2P98160 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC3.29□□□□□ -1.88
HSPG2P98160 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.29□□□□□ -1.88
HSPG2P98160 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC3.29□□□□□ -1.88
HSPG2P98160 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
HSPG2P98160 RPL12P25-202ENST00000598100 674 ntBASIC3.29□□□□□ -1.88
HSPG2P98160 AC011497.2-201ENST00000600255 639 ntBASIC3.29□□□□□ -1.88
HSPG2P98160 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 COL4A6-208ENST00000538570 6528 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 ZNF286A-221ENST00000593105 5222 ntTSL 3 BASIC3.29□□□□□ -1.88
HSPG2P98160 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC3.29□□□□□ -1.88
HSPG2P98160 FLNB-204ENST00000429972 9430 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 ZEB2-236ENST00000636471 9583 ntTSL 5 BASIC3.29□□□□□ -1.88
HSPG2P98160 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HSPG2P98160 ZNF264-201ENST00000263095 12163 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
HSPG2P98160 ALB-214ENST00000509063 1911 ntTSL 5 BASIC3.29□□□□□ -1.88
HSPG2P98160 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC3.29□□□□□ -1.88
HSPG2P98160 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC3.28□□□□□ -1.88
HSPG2P98160 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
HSPG2P98160 CDC123-202ENST00000378900 933 ntTSL 5 BASIC3.28□□□□□ -1.88
HSPG2P98160 AC006946.1-201ENST00000429106 328 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 CT45A11P-201ENST00000448043 1134 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 AL672138.1-201ENST00000450604 1015 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 AP000797.2-201ENST00000475768 606 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC3.28□□□□□ -1.88
HSPG2P98160 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC3.28□□□□□ -1.88
HSPG2P98160 AC245389.1-201ENST00000605141 529 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 AL445647.2-201ENST00000615170 130 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC3.28□□□□□ -1.88
HSPG2P98160 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 AC007614.5-201ENST00000623424 8892 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 MAP1B-201ENST00000296755 12036 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC3.28□□□□□ -1.88
HSPG2P98160 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC3.28□□□□□ -1.88
HSPG2P98160 LRRC37A16P-202ENST00000586022 3725 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC3.28□□□□□ -1.88
HSPG2P98160 Y_RNA.333-201ENST00000365274 102 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.28□□□□□ -1.88
HSPG2P98160 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 OR13K1P-201ENST00000444577 975 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC3.28□□□□□ -1.88
HSPG2P98160 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC3.28□□□□□ -1.88
HSPG2P98160 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC3.28□□□□□ -1.88
HSPG2P98160 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
HSPG2P98160 AC097063.1-201ENST00000426714 1797 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC3.28□□□□□ -1.88
HSPG2P98160 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC3.28□□□□□ -1.88
HSPG2P98160 FRMPD3-201ENST00000276185 7304 ntAPPRIS P2 TSL 5 BASIC3.28□□□□□ -1.88
HSPG2P98160 AL137100.1-201ENST00000556703 1620 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.28□□□□□ -1.88
HSPG2P98160 RPL23AP1-201ENST00000428990 471 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 OR2B7P-201ENST00000429302 934 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 FTH1P10-202ENST00000430907 550 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HSPG2P98160 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC3.28□□□□□ -1.88
HSPG2P98160 AP002812.1-201ENST00000495378 474 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC3.28□□□□□ -1.88
HSPG2P98160 AC090424.1-201ENST00000535243 736 ntBASIC3.28□□□□□ -1.88
HSPG2P98160 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms