Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
PRKDCP78527 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC3.81□□□□□ -1.8
PRKDCP78527 COL4A6-203ENST00000394872 6750 ntTSL 5 BASIC3.81□□□□□ -1.8
PRKDCP78527 MYH2-201ENST00000245503 6339 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 OPCML-201ENST00000331898 6833 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PRKDCP78527 AMZ2P2-201ENST00000406819 1057 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 RPL7P19-201ENST00000469948 618 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC3.8□□□□□ -1.8
PRKDCP78527 SCARNA22-201ENST00000503991 125 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 RN7SKP253-201ENST00000516424 309 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 TPM3P3-201ENST00000521343 354 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 RPL7P50-201ENST00000600588 727 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 AL445567.2-201ENST00000618935 498 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
PRKDCP78527 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 SERINC5-202ENST00000507668 6479 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
PRKDCP78527 AC005034.3-201ENST00000604845 1747 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC3.8□□□□□ -1.8
PRKDCP78527 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 ATP5F1P3-201ENST00000397213 657 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 AL732292.1-201ENST00000426692 226 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.8□□□□□ -1.8
PRKDCP78527 YWHABP1-201ENST00000445359 727 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 AC073358.1-201ENST00000505671 684 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 FGB-207ENST00000509493 1164 ntTSL 5 BASIC3.8□□□□□ -1.8
PRKDCP78527 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC3.8□□□□□ -1.8
PRKDCP78527 AC007346.2-201ENST00000564816 892 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 AC098935.2-201ENST00000604222 466 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
PRKDCP78527 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 ANKFY1-209ENST00000574367 5033 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 KALRN-211ENST00000460856 6509 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 NSD2-205ENST00000382892 7706 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 ZBTB21-203ENST00000398499 5806 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 AC032011.1-201ENST00000611703 1549 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 IGKV7-3-201ENST00000357453 298 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 CEACAMP8-201ENST00000413902 580 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 GAPDHP49-201ENST00000421421 961 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC3.8□□□□□ -1.8
PRKDCP78527 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.8□□□□□ -1.8
PRKDCP78527 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.8□□□□□ -1.8
PRKDCP78527 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC3.8□□□□□ -1.8
PRKDCP78527 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC3.8□□□□□ -1.8
PRKDCP78527 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC3.8□□□□□ -1.8
PRKDCP78527 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC3.8□□□□□ -1.8
PRKDCP78527 AC005341.1-201ENST00000571086 708 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 AC020915.5-201ENST00000596836 964 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 AC243756.2-201ENST00000618406 463 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC3.8□□□□□ -1.8
PRKDCP78527 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC3.8□□□□□ -1.8
PRKDCP78527 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 POLR1B-203ENST00000409894 4457 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC3.8□□□□□ -1.8
PRKDCP78527 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC3.8□□□□□ -1.8
PRKDCP78527 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC3.8□□□□□ -1.8
PRKDCP78527 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
PRKDCP78527 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
PRKDCP78527 MXRA5Y-201ENST00000420610 8000 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC3.8□□□□□ -1.8
PRKDCP78527 RNU1-13P-201ENST00000384499 162 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC3.8□□□□□ -1.8
PRKDCP78527 AC021074.2-201ENST00000468434 172 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.8□□□□□ -1.8
PRKDCP78527 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC3.8□□□□□ -1.8
PRKDCP78527 OR4H6P-201ENST00000563771 921 ntBASIC3.8□□□□□ -1.8
PRKDCP78527 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC3.8□□□□□ -1.8
PRKDCP78527 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PRKDCP78527 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
PRKDCP78527 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC3.79□□□□□ -1.8
PRKDCP78527 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
PRKDCP78527 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC3.79□□□□□ -1.8
PRKDCP78527 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 NCAM1-222ENST00000615285 6045 ntTSL 5 BASIC3.79□□□□□ -1.8
PRKDCP78527 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC3.79□□□□□ -1.8
PRKDCP78527 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PRKDCP78527 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms