Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 OR6C64P-201ENST00000419708 825 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC4.16□□□□□ -1.74
FOXA3P55318 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
FOXA3P55318 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA3P55318 RPL7P56-201ENST00000429441 717 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 GAPDHP48-201ENST00000436626 961 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC4.16□□□□□ -1.74
FOXA3P55318 RN7SL269P-201ENST00000467795 305 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 RPL12P30-201ENST00000488389 499 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 RNU6-1334P-201ENST00000516032 105 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.16□□□□□ -1.74
FOXA3P55318 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
FOXA3P55318 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA3P55318 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC4.16□□□□□ -1.74
FOXA3P55318 TDGP1-201ENST00000543961 1229 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 AC068993.1-201ENST00000546724 589 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC4.16□□□□□ -1.74
FOXA3P55318 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
FOXA3P55318 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA3P55318 AC096996.1-201ENST00000563813 325 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 AC068408.1-201ENST00000577406 1144 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 AC107993.1-201ENST00000591343 684 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 AC036176.3-201ENST00000602456 418 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA3P55318 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
FOXA3P55318 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
FOXA3P55318 LINC01355-201ENST00000566551 5444 ntBASIC4.16□□□□□ -1.74
FOXA3P55318 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
FOXA3P55318 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
FOXA3P55318 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
FOXA3P55318 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.15□□□□□ -1.74
FOXA3P55318 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.15□□□□□ -1.74
FOXA3P55318 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
FOXA3P55318 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
FOXA3P55318 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
FOXA3P55318 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
FOXA3P55318 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.15□□□□□ -1.74
FOXA3P55318 AC017079.1-201ENST00000333650 415 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 AC007618.1-201ENST00000366455 732 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC4.15□□□□□ -1.75
FOXA3P55318 PCNPP4-201ENST00000414817 517 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.15□□□□□ -1.75
FOXA3P55318 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC4.15□□□□□ -1.75
FOXA3P55318 NIFKP3-201ENST00000417799 865 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC4.15□□□□□ -1.75
FOXA3P55318 TRGV5P-201ENST00000419915 354 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC4.15□□□□□ -1.75
FOXA3P55318 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA3P55318 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA3P55318 AC007679.3-201ENST00000434035 414 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 AC128677.1-201ENST00000436016 442 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC4.15□□□□□ -1.75
FOXA3P55318 AL929410.2-201ENST00000451170 189 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 AL354872.1-201ENST00000456361 967 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC4.15□□□□□ -1.75
FOXA3P55318 RN7SL570P-201ENST00000484405 292 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA3P55318 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.15□□□□□ -1.75
FOXA3P55318 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA3P55318 CSNK1A1P3-201ENST00000504105 330 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 AL671862.1-201ENST00000515851 349 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC4.15□□□□□ -1.75
FOXA3P55318 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.15□□□□□ -1.75
FOXA3P55318 AC091304.5-201ENST00000568969 158 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC4.15□□□□□ -1.75
FOXA3P55318 AC025283.1-201ENST00000572039 734 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 MIR3157-201ENST00000578688 85 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 PRPF19P1-201ENST00000584766 898 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC4.15□□□□□ -1.75
FOXA3P55318 AL136131.3-201ENST00000607600 188 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 RNU6-84P-201ENST00000607737 102 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC4.15□□□□□ -1.75
FOXA3P55318 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 GAPDHP41-201ENST00000613707 975 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA3P55318 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC4.15□□□□□ -1.75
FOXA3P55318 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA3P55318 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
FOXA3P55318 AC008079.2-201ENST00000623543 20396 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA3P55318 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
FOXA3P55318 TTC39DP-201ENST00000416781 1688 ntBASIC4.15□□□□□ -1.75
FOXA3P55318 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
FOXA3P55318 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.15□□□□□ -1.75
FOXA3P55318 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA3P55318 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA3P55318 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA3P55318 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 DDX18P6-201ENST00000450119 1997 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXA3P55318 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
FOXA3P55318 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXA3P55318 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXA3P55318 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC4.14□□□□□ -1.75
FOXA3P55318 MRPL47-201ENST00000259038 1126 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms