Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 SNORA70-201ENST00000384436 135 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC098592.2-201ENST00000413158 265 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 MRPL53P1-201ENST00000414323 319 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AK4P4-201ENST00000419465 646 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 NANOGP4-201ENST00000427230 913 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC073909.1-201ENST00000447112 999 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 LRRC37A14P-201ENST00000452297 462 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 DUTP7-201ENST00000507982 486 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 HMGN2P36-201ENST00000529541 409 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC007494.1-201ENST00000562293 760 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 TXNP4-201ENST00000575018 310 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 MIR4700-201ENST00000578311 74 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC015802.2-201ENST00000589690 189 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC125494.2-201ENST00000602431 657 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC145423.1-201ENST00000605712 336 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC037198.3-201ENST00000616754 526 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AF117829.2-201ENST00000619538 361 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC018445.2-201ENST00000622987 260 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 AC116036.1-201ENST00000412199 367 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 MYL6P5-201ENST00000412707 459 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 RPS17P17-201ENST00000419392 409 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 GAPDHP58-201ENST00000438477 1006 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 AC093166.4-201ENST00000457867 318 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 OR2AO1P-201ENST00000476497 403 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 DEFB109A-201ENST00000482450 265 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 NENFP3-201ENST00000503735 313 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 AP001960.1-201ENST00000506494 658 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 AC074087.1-201ENST00000512059 724 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 OR4A42P-201ENST00000531397 938 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 GARSP1-201ENST00000570895 719 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 AC004808.2-201ENST00000627965 773 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 AC112255.1-201ENST00000624070 2493 ntBASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.92□□□□□ -1.46
HDDC3Q8N4P3 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 THAP12P9-201ENST00000503971 2360 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 RNA5SP443-201ENST00000363083 132 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 HMGB1P20-201ENST00000402555 677 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 RN7SKP29-201ENST00000410957 272 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 AC127526.2-201ENST00000426436 775 ntBASIC5.91□□□□□ -1.46
HDDC3Q8N4P3 NPM1P22-201ENST00000427761 952 ntBASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms