Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC7.18□□□□□ -1.26
MSX1P28360 AL050320.1-201ENST00000420044 446 ntTSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 RPS27AP14-201ENST00000422868 454 ntBASIC7.18□□□□□ -1.26
MSX1P28360 DAZAP2-202ENST00000425012 1117 ntTSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC7.18□□□□□ -1.26
MSX1P28360 DSTNP5-201ENST00000427921 523 ntBASIC7.18□□□□□ -1.26
MSX1P28360 GAPDHP32-201ENST00000433816 998 ntBASIC7.18□□□□□ -1.26
MSX1P28360 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC7.18□□□□□ -1.26
MSX1P28360 AC007365.1-201ENST00000439964 627 ntTSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 AC016396.1-201ENST00000440189 328 ntTSL 3 BASIC7.18□□□□□ -1.26
MSX1P28360 CALM1P1-201ENST00000442082 433 ntBASIC7.18□□□□□ -1.26
MSX1P28360 MIR4435-2HG-211ENST00000443467 826 ntTSL 3 BASIC7.18□□□□□ -1.26
MSX1P28360 LINC00533-201ENST00000456103 537 ntTSL 3 BASIC7.18□□□□□ -1.26
MSX1P28360 AC073522.1-201ENST00000483312 377 ntBASIC7.18□□□□□ -1.26
MSX1P28360 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 HMGN2P25-201ENST00000486956 268 ntBASIC7.18□□□□□ -1.26
MSX1P28360 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 AC008629.2-201ENST00000503783 483 ntBASIC7.18□□□□□ -1.26
MSX1P28360 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC7.18□□□□□ -1.26
MSX1P28360 LINC01094-206ENST00000514130 594 ntTSL 4 BASIC7.18□□□□□ -1.26
MSX1P28360 RNU6-1308P-201ENST00000516817 103 ntBASIC7.18□□□□□ -1.26
MSX1P28360 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC7.18□□□□□ -1.26
MSX1P28360 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC7.18□□□□□ -1.26
MSX1P28360 SLN-202ENST00000525934 436 ntAPPRIS P1 TSL 3 BASIC7.18□□□□□ -1.26
MSX1P28360 AP000435.1-201ENST00000528539 496 ntBASIC7.18□□□□□ -1.26
MSX1P28360 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC7.18□□□□□ -1.26
MSX1P28360 APEX1-214ENST00000557054 888 ntTSL 5 BASIC7.18□□□□□ -1.26
MSX1P28360 AC092868.1-201ENST00000557949 802 ntBASIC7.18□□□□□ -1.26
MSX1P28360 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 MIR5705-201ENST00000579870 89 ntBASIC7.18□□□□□ -1.26
MSX1P28360 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC7.18□□□□□ -1.26
MSX1P28360 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 KPNA2P3-201ENST00000584190 848 ntBASIC7.18□□□□□ -1.26
MSX1P28360 RPL27-205ENST00000589037 585 ntAPPRIS P1 TSL 3 BASIC7.18□□□□□ -1.26
MSX1P28360 AC007262.1-201ENST00000604099 321 ntBASIC7.18□□□□□ -1.26
MSX1P28360 AC091488.1-201ENST00000604239 660 ntBASIC7.18□□□□□ -1.26
MSX1P28360 NDUFB9P1-201ENST00000604683 510 ntBASIC7.18□□□□□ -1.26
MSX1P28360 AL354733.2-202ENST00000615485 742 ntTSL 5 BASIC7.18□□□□□ -1.26
MSX1P28360 NUDT13-208ENST00000617744 928 ntTSL 5 BASIC7.18□□□□□ -1.26
MSX1P28360 CNOT4-207ENST00000451834 3507 ntAPPRIS ALT1 TSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 NUDT13-203ENST00000372997 1919 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 GULP1-203ENST00000409609 1932 ntAPPRIS P3 TSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 MYT1L-AS1-202ENST00000448106 3230 ntTSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 CCDC77-202ENST00000412006 2253 ntAPPRIS ALT2 TSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 XIRP2-202ENST00000409043 3292 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 DDX18P6-201ENST00000450119 1997 ntBASIC7.18□□□□□ -1.26
MSX1P28360 LINC02128-205ENST00000641755 1334 ntBASIC7.18□□□□□ -1.26
MSX1P28360 IFI44-201ENST00000370747 1687 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC7.18□□□□□ -1.26
MSX1P28360 AL451064.2-201ENST00000623514 1654 ntBASIC7.18□□□□□ -1.26
MSX1P28360 ODF2-220ENST00000604420 3030 ntTSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 AP002364.1-201ENST00000623330 3386 ntBASIC7.18□□□□□ -1.26
MSX1P28360 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 SLC16A4-206ENST00000472422 2420 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 MAPK10-333ENST00000641607 2481 ntBASIC7.18□□□□□ -1.26
MSX1P28360 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
MSX1P28360 SUPT20H-205ENST00000464744 2625 ntAPPRIS P3 TSL 2 BASIC7.17□□□□□ -1.26
MSX1P28360 ZNF268-213ENST00000542986 3773 ntTSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC7.17□□□□□ -1.26
MSX1P28360 NUGGC-201ENST00000413272 3887 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 ZNF337-201ENST00000252979 3205 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 AL031985.3-201ENST00000565390 2449 ntBASIC7.17□□□□□ -1.26
MSX1P28360 MED23-209ENST00000539158 1636 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 PRNCR1-201ENST00000635449 12727 ntBASIC7.17□□□□□ -1.26
MSX1P28360 MAPK10-313ENST00000641405 2469 ntBASIC7.17□□□□□ -1.26
MSX1P28360 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
MSX1P28360 AP4S1-211ENST00000616371 4595 ntAPPRIS P1 TSL 2 BASIC7.17□□□□□ -1.26
MSX1P28360 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC7.17□□□□□ -1.26
MSX1P28360 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC7.17□□□□□ -1.26
MSX1P28360 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 CARD17-201ENST00000375707 466 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 Y_RNA.409-201ENST00000383990 98 ntBASIC7.17□□□□□ -1.26
MSX1P28360 SMIM2-201ENST00000400419 822 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSX1P28360 RNA5SP231-201ENST00000410496 138 ntBASIC7.17□□□□□ -1.26
MSX1P28360 RN7SKP261-201ENST00000410948 278 ntBASIC7.17□□□□□ -1.26
MSX1P28360 AL451048.1-201ENST00000413328 217 ntTSL 3 BASIC7.17□□□□□ -1.26
MSX1P28360 LINC00266-1-202ENST00000425473 629 ntTSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 SUMO2P8-201ENST00000434672 286 ntBASIC7.17□□□□□ -1.26
MSX1P28360 LINC00350-201ENST00000438640 422 ntTSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 COX6CP18-201ENST00000448769 222 ntBASIC7.17□□□□□ -1.26
MSX1P28360 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC7.17□□□□□ -1.26
MSX1P28360 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC7.17□□□□□ -1.26
MSX1P28360 RN7SL213P-201ENST00000463482 317 ntBASIC7.17□□□□□ -1.26
MSX1P28360 AC023598.1-201ENST00000472521 361 ntBASIC7.17□□□□□ -1.26
MSX1P28360 RN7SL12P-201ENST00000473849 290 ntBASIC7.17□□□□□ -1.26
MSX1P28360 RPL7P38-201ENST00000488396 739 ntBASIC7.17□□□□□ -1.26
MSX1P28360 LSAMP-AS1-201ENST00000490351 553 ntTSL 2 BASIC7.17□□□□□ -1.26
MSX1P28360 AC127024.1-201ENST00000490847 418 ntBASIC7.17□□□□□ -1.26
MSX1P28360 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC7.17□□□□□ -1.26
MSX1P28360 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC7.17□□□□□ -1.26
MSX1P28360 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC7.17□□□□□ -1.26
MSX1P28360 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC7.17□□□□□ -1.26
MSX1P28360 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC7.17□□□□□ -1.26
MSX1P28360 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC7.17□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms