Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIR135B-201ENST00000362189 97 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 RNU6-26P-201ENST00000383985 107 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 RNU6-1300P-201ENST00000391046 108 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 RPL23AP47-201ENST00000408017 460 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 Z68868.1-201ENST00000429048 544 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 RPSAP53-201ENST00000433498 862 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC009988.1-201ENST00000434988 310 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC092167.1-201ENST00000435466 495 ntTSL 4 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 TBL1YP1-201ENST00000440297 1026 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC023512.1-201ENST00000444513 499 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 OR4A47-201ENST00000446524 1064 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC013399.1-201ENST00000450311 418 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 LINC01007-203ENST00000451953 579 ntTSL 4 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC103563.5-201ENST00000455643 364 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC093270.1-201ENST00000482584 486 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 VKORC1-208ENST00000498155 870 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 RPL38P4-201ENST00000502376 214 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC006390.1-201ENST00000508068 283 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 DCSTAMP-203ENST00000517991 949 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 HNRNPA1P38-201ENST00000523612 957 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC246817.2-201ENST00000523971 577 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AP002812.4-201ENST00000532139 286 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC079598.4-201ENST00000549647 265 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC007375.2-201ENST00000557752 603 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 MTCO3P23-201ENST00000561363 289 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC008966.2-201ENST00000606157 453 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC011815.3-201ENST00000624194 473 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC024023.1-201ENST00000624530 922 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 TEX14-201ENST00000240361 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 SEPT4-211ENST00000579371 1362 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 FAM107B-201ENST00000181796 3785 ntTSL 2 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 DHRS9-202ENST00000412271 1465 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AC010533.1-201ENST00000624875 2105 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 MAT1A-201ENST00000372213 3410 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 CTNNA1-210ENST00000518825 3536 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 MRAS-211ENST00000621127 3801 ntTSL 5 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 EIF4BP2-201ENST00000416702 1794 ntBASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 PPP3CA-205ENST00000507176 1958 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 MSANTD3-TMEFF1-201ENST00000502978 2069 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
VPS9D1Q9Y2B5 MS4A10-201ENST00000308287 2296 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 EPS15L1-214ENST00000602009 3915 ntTSL 2 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 COPS4-201ENST00000264389 1744 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 AC104066.2-201ENST00000564513 1741 ntTSL 3 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 GTF2H1-201ENST00000265963 2982 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 STXBP5-AS1-209ENST00000606831 2025 ntTSL 5 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 LDB3-201ENST00000263066 3873 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 ZNF701-201ENST00000301093 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 TMEM87A-202ENST00000389834 3109 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 DYNLRB1-202ENST00000357156 675 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 RNU6-238P-201ENST00000363313 106 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 SSX6-201ENST00000376932 562 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 Y_RNA.527-201ENST00000384573 102 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 FCRL6-204ENST00000392235 947 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 MS4A3-203ENST00000395032 867 ntTSL 2 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 AC121334.1-201ENST00000396414 802 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 NIP7P3-201ENST00000404319 515 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 GAPDHP42-201ENST00000406848 981 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 MIR1272-201ENST00000408106 129 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 RNU4-14P-201ENST00000410858 122 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 LINC00426-202ENST00000417079 1045 ntTSL 3 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 FKBP1AP3-201ENST00000423650 319 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 AL035045.1-201ENST00000425405 632 ntTSL 3 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 SKP1P3-201ENST00000429280 487 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 EEF1A1P27-201ENST00000429983 1135 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 RPL35P4-201ENST00000446039 322 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 ZNF337-AS1-206ENST00000455791 650 ntTSL 3 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 MED28P7-201ENST00000456611 530 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 RPS27P12-201ENST00000464146 258 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 RN7SL63P-201ENST00000468228 304 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 RPL3P10-201ENST00000476002 1164 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 AC105910.1-201ENST00000482585 483 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 AC013828.2-201ENST00000532487 235 ntBASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC8.29□□□□□ -1.08
VPS9D1Q9Y2B5 AC099684.3-201ENST00000574483 560 ntTSL 4 BASIC8.29□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms