Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 C2orf71-201ENST00000331664 7044 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.31□□□□□ -1.56
VPS13AQ96RL7 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 ZNF791-202ENST00000446165 6412 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 F5-202ENST00000367797 7024 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 GJA6P-201ENST00000415117 1042 ntBASIC5.31□□□□□ -1.56
VPS13AQ96RL7 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 NRP1-206ENST00000374867 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 ZNF592-201ENST00000299927 7863 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 DIO2-202ENST00000438257 6136 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
VPS13AQ96RL7 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 RPL10P17-201ENST00000453852 316 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AC140172.1-201ENST00000502928 141 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 RNA5SP143-201ENST00000516936 115 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 USP3-201ENST00000268049 5311 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 RPL12P28-201ENST00000430852 489 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 HMGB1P40-201ENST00000525121 540 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AP000769.2-201ENST00000602344 396 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AL132640.2-201ENST00000559968 1698 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 MT-RNR2-201ENST00000387347 1559 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 TRANK1-201ENST00000429976 10481 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AC092747.4-201ENST00000620519 1861 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 CACNA1D-203ENST00000422281 6414 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 DCP2-208ENST00000515408 8029 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 RNU4-2-201ENST00000365668 141 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 SNORA48.7-201ENST00000391302 135 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AC119751.6-201ENST00000416712 186 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AC093414.1-201ENST00000434712 514 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AC138701.1-201ENST00000524329 714 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 MIR4737-201ENST00000583979 81 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AC024589.2-201ENST00000605642 1294 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 TCL6_3.1-201ENST00000619064 137 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AL022323.3-201ENST00000623888 5388 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 OR5M2P-202ENST00000641241 4242 ntBASIC5.3□□□□□ -1.56
VPS13AQ96RL7 ZEB2-236ENST00000636471 9583 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 ILDR2-201ENST00000271417 13140 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 BCOR-202ENST00000378444 6358 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS13AQ96RL7 AL512590.3-202ENST00000534123 6463 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 PAN2-221ENST00000610546 5301 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms