Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 SRRM1P3-201ENST00000426911 2678 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC4P09017 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
HOXC4P09017 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC4P09017 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXC4P09017 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC4P09017 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
HOXC4P09017 AL161756.3-201ENST00000641216 2071 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC4P09017 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXC4P09017 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
HOXC4P09017 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
HOXC4P09017 RN7SKP160-201ENST00000363804 340 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
HOXC4P09017 RN7SKP229-201ENST00000410465 302 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 RMRPP5-201ENST00000411156 267 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 OR6E1P-201ENST00000414424 923 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 DPPA2P2-201ENST00000418220 897 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC4P09017 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXC4P09017 MRPS21P2-201ENST00000424704 264 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 RPS3AP38-201ENST00000435889 763 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 FMO7P-201ENST00000436045 768 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC4P09017 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 RN7SL72P-201ENST00000460697 269 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC4P09017 AC026782.2-201ENST00000510845 636 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXC4P09017 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
HOXC4P09017 ATP5LP3-201ENST00000514223 304 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXC4P09017 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.62□□□□□ -1.51
HOXC4P09017 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC4P09017 AC023389.2-201ENST00000580031 955 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC4P09017 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC4P09017 AC018690.1-201ENST00000608144 626 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXC4P09017 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXC4P09017 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC4P09017 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC4P09017 MAPK10-350ENST00000641777 965 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 AP004607.3-201ENST00000530354 3915 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 CIR1P2-201ENST00000514821 1342 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC4P09017 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC4P09017 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC4P09017 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC4P09017 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC4P09017 AC079753.1-201ENST00000623243 3868 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC4P09017 MRE11P1-201ENST00000464884 2127 ntBASIC5.62□□□□□ -1.51
HOXC4P09017 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC4P09017 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXC4P09017 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
HOXC4P09017 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXC4P09017 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
HOXC4P09017 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC4P09017 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
HOXC4P09017 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC4P09017 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC4P09017 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXC4P09017 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC4P09017 MIR130A-201ENST00000385274 89 ntBASIC5.61□□□□□ -1.51
HOXC4P09017 RNU11-201ENST00000387069 134 ntBASIC5.61□□□□□ -1.51
HOXC4P09017 RPL11P3-201ENST00000395256 523 ntBASIC5.61□□□□□ -1.51
HOXC4P09017 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.61□□□□□ -1.51
HOXC4P09017 RN7SKP279-201ENST00000411383 298 ntBASIC5.61□□□□□ -1.51
HOXC4P09017 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXC4P09017 RNF10P1-201ENST00000418589 369 ntBASIC5.61□□□□□ -1.51
HOXC4P09017 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.61□□□□□ -1.51
HOXC4P09017 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXC4P09017 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXC4P09017 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXC4P09017 AL450023.1-201ENST00000450868 751 ntBASIC5.61□□□□□ -1.51
HOXC4P09017 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC4P09017 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC4P09017 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXC4P09017 AC114786.1-201ENST00000512892 1415 ntBASIC5.61□□□□□ -1.51
HOXC4P09017 RNA5SP362-201ENST00000516048 118 ntBASIC5.61□□□□□ -1.51
HOXC4P09017 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXC4P09017 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.61□□□□□ -1.51
HOXC4P09017 RBM22P12-201ENST00000567098 1255 ntBASIC5.61□□□□□ -1.51
HOXC4P09017 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXC4P09017 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
HOXC4P09017 AL360012.1-201ENST00000602813 131 ntBASIC5.61□□□□□ -1.51
HOXC4P09017 LSM1P2-201ENST00000604911 322 ntBASIC5.61□□□□□ -1.51
HOXC4P09017 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.61□□□□□ -1.51
HOXC4P09017 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXC4P09017 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
HOXC4P09017 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXC4P09017 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC4P09017 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXC4P09017 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
HOXC4P09017 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms