Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHB3Q9Y5E6 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHB3Q9Y5E6 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PCDHB3Q9Y5E6 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHB3Q9Y5E6 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHB3Q9Y5E6 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHB3Q9Y5E6 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHB3Q9Y5E6 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 AC018445.3-201ENST00000624177 1945 ntBASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 AL390719.1-204ENST00000412397 1219 ntBASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 AIRN-201ENST00000601203 4374 ntBASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHB3Q9Y5E6 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 MIR4497-201ENST00000583208 89 ntBASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 KRT8P36-201ENST00000489121 1440 ntBASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PCDHB3Q9Y5E6 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 AC233263.1-201ENST00000578059 224 ntBASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 AC120498.8-201ENST00000614275 531 ntBASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCDHB3Q9Y5E6 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms