Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 AC092118.2-201ENST00000613495 667 ntBASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 AC018553.1-201ENST00000616682 1458 ntBASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 AC116351.2-201ENST00000606540 1585 ntBASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HIF3AQ9Y2N7 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 AC006970.2-201ENST00000450065 779 ntBASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 AC083906.2-201ENST00000511578 360 ntBASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HIF3AQ9Y2N7 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 DUSP5P2-201ENST00000426873 1033 ntBASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 AC005829.2-201ENST00000571422 1056 ntBASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HIF3AQ9Y2N7 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 AL390719.1-204ENST00000412397 1219 ntBASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HIF3AQ9Y2N7 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.71■□□□□ 0.42
HIF3AQ9Y2N7 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms