Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NUCKS1Q9H1E3 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NUCKS1Q9H1E3 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.29■■□□□ 1
NUCKS1Q9H1E3 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NUCKS1Q9H1E3 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.29■■□□□ 1
NUCKS1Q9H1E3 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NUCKS1Q9H1E3 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NUCKS1Q9H1E3 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
NUCKS1Q9H1E3 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.29■■□□□ 1
NUCKS1Q9H1E3 AL355472.2-201ENST00000422958 438 ntBASIC21.29■■□□□ 1
NUCKS1Q9H1E3 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.29■■□□□ 1
NUCKS1Q9H1E3 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NUCKS1Q9H1E3 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NUCKS1Q9H1E3 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 BX276092.2-201ENST00000417668 665 ntBASIC21.28■■□□□ 1
NUCKS1Q9H1E3 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.28■■□□□ 1
NUCKS1Q9H1E3 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 TNXA-203ENST00000507684 2038 ntBASIC21.27■■□□□ 1
NUCKS1Q9H1E3 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
NUCKS1Q9H1E3 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
NUCKS1Q9H1E3 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NUCKS1Q9H1E3 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
NUCKS1Q9H1E3 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC21.26■□□□□ 0.99
NUCKS1Q9H1E3 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUCKS1Q9H1E3 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
NUCKS1Q9H1E3 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUCKS1Q9H1E3 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUCKS1Q9H1E3 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.26■□□□□ 0.99
NUCKS1Q9H1E3 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.26■□□□□ 0.99
NUCKS1Q9H1E3 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUCKS1Q9H1E3 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUCKS1Q9H1E3 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUCKS1Q9H1E3 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms