Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 AC092720.2-201ENST00000602388 1665 ntBASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 KRT16P6-202ENST00000425692 1426 ntBASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 FAM197Y1-201ENST00000421178 764 ntBASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 AP002982.1-201ENST00000492365 877 ntBASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 GABARAPL3-202ENST00000624044 1851 ntBASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
TRAIPQ9BWF2 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 NIFKP9-201ENST00000419265 221 ntBASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 KSR1P1-201ENST00000446298 240 ntBASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 NUDT16P1-203ENST00000513809 620 ntBASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 TFP1-202ENST00000475455 1573 ntBASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAIPQ9BWF2 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 AC092667.1-201ENST00000434301 2586 ntBASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 AP005212.1-201ENST00000581547 1997 ntBASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 FAM210CP-201ENST00000445714 574 ntBASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
TRAIPQ9BWF2 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 AP006587.1-201ENST00000534129 1502 ntBASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAIPQ9BWF2 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 AC116562.2-201ENST00000507042 360 ntBASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRAIPQ9BWF2 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
TRAIPQ9BWF2 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.03
TRAIPQ9BWF2 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms