Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC32.84■■■□□ 2.85
IFT140Q96RY7 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC32.84■■■□□ 2.85
IFT140Q96RY7 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC32.84■■■□□ 2.85
IFT140Q96RY7 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
IFT140Q96RY7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
IFT140Q96RY7 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC32.83■■■□□ 2.85
IFT140Q96RY7 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC32.83■■■□□ 2.85
IFT140Q96RY7 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
IFT140Q96RY7 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC32.83■■■□□ 2.85
IFT140Q96RY7 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC32.83■■■□□ 2.85
IFT140Q96RY7 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC32.83■■■□□ 2.85
IFT140Q96RY7 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC32.83■■■□□ 2.85
IFT140Q96RY7 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
IFT140Q96RY7 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.85
IFT140Q96RY7 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC32.82■■■□□ 2.84
IFT140Q96RY7 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC32.82■■■□□ 2.84
IFT140Q96RY7 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
IFT140Q96RY7 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC32.82■■■□□ 2.84
IFT140Q96RY7 AC242852.2-201ENST00000615738 1807 ntBASIC32.82■■■□□ 2.84
IFT140Q96RY7 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
IFT140Q96RY7 AL645929.1-201ENST00000420084 975 ntBASIC32.82■■■□□ 2.84
IFT140Q96RY7 GCSHP2-201ENST00000560971 527 ntBASIC32.82■■■□□ 2.84
IFT140Q96RY7 FGF14-AS2-201ENST00000606448 1074 ntBASIC32.82■■■□□ 2.84
IFT140Q96RY7 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC32.82■■■□□ 2.84
IFT140Q96RY7 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC32.82■■■□□ 2.84
IFT140Q96RY7 TUB-203ENST00000534099 1759 ntTSL 2 BASIC32.82■■■□□ 2.84
IFT140Q96RY7 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
IFT140Q96RY7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC32.82■■■□□ 2.84
IFT140Q96RY7 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
IFT140Q96RY7 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
IFT140Q96RY7 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC32.81■■■□□ 2.84
IFT140Q96RY7 AC009078.2-202ENST00000463353 338 ntBASIC32.81■■■□□ 2.84
IFT140Q96RY7 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC32.81■■■□□ 2.84
IFT140Q96RY7 CKBP1-201ENST00000565489 1086 ntBASIC32.81■■■□□ 2.84
IFT140Q96RY7 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC32.81■■■□□ 2.84
IFT140Q96RY7 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
IFT140Q96RY7 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC32.8■■■□□ 2.84
IFT140Q96RY7 PHB2-202ENST00000440277 996 ntTSL 5 BASIC32.8■■■□□ 2.84
IFT140Q96RY7 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC32.8■■■□□ 2.84
IFT140Q96RY7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC32.8■■■□□ 2.84
IFT140Q96RY7 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
IFT140Q96RY7 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
IFT140Q96RY7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
IFT140Q96RY7 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC32.8■■■□□ 2.84
IFT140Q96RY7 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC32.8■■■□□ 2.84
IFT140Q96RY7 HBZP1-201ENST00000354915 429 ntBASIC32.8■■■□□ 2.84
IFT140Q96RY7 IFNL4P1-201ENST00000607083 540 ntBASIC32.8■■■□□ 2.84
IFT140Q96RY7 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC32.8■■■□□ 2.84
IFT140Q96RY7 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
IFT140Q96RY7 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC32.79■■■□□ 2.84
IFT140Q96RY7 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC32.79■■■□□ 2.84
IFT140Q96RY7 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
IFT140Q96RY7 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
IFT140Q96RY7 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC32.79■■■□□ 2.84
IFT140Q96RY7 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC32.79■■■□□ 2.84
IFT140Q96RY7 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC32.79■■■□□ 2.84
IFT140Q96RY7 AC092329.2-201ENST00000598402 547 ntBASIC32.79■■■□□ 2.84
IFT140Q96RY7 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC32.79■■■□□ 2.84
IFT140Q96RY7 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
IFT140Q96RY7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC32.78■■■□□ 2.84
IFT140Q96RY7 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
IFT140Q96RY7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC32.78■■■□□ 2.84
IFT140Q96RY7 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC32.78■■■□□ 2.84
IFT140Q96RY7 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC32.78■■■□□ 2.84
IFT140Q96RY7 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
IFT140Q96RY7 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC32.78■■■□□ 2.84
IFT140Q96RY7 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC32.78■■■□□ 2.84
IFT140Q96RY7 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC32.78■■■□□ 2.84
IFT140Q96RY7 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC32.78■■■□□ 2.84
IFT140Q96RY7 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC32.77■■■□□ 2.84
IFT140Q96RY7 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
IFT140Q96RY7 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC32.77■■■□□ 2.84
IFT140Q96RY7 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC32.77■■■□□ 2.84
IFT140Q96RY7 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC32.77■■■□□ 2.84
IFT140Q96RY7 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC32.77■■■□□ 2.84
IFT140Q96RY7 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC32.77■■■□□ 2.84
IFT140Q96RY7 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC32.77■■■□□ 2.84
IFT140Q96RY7 AL031008.1-201ENST00000619963 541 ntBASIC32.77■■■□□ 2.84
IFT140Q96RY7 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
IFT140Q96RY7 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC32.77■■■□□ 2.84
IFT140Q96RY7 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC32.76■■■□□ 2.84
IFT140Q96RY7 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC32.76■■■□□ 2.84
IFT140Q96RY7 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
IFT140Q96RY7 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.84
IFT140Q96RY7 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC32.76■■■□□ 2.84
IFT140Q96RY7 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.84
IFT140Q96RY7 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC32.76■■■□□ 2.83
IFT140Q96RY7 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC32.75■■■□□ 2.83
IFT140Q96RY7 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
IFT140Q96RY7 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC32.75■■■□□ 2.83
IFT140Q96RY7 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC32.75■■■□□ 2.83
IFT140Q96RY7 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC32.74■■■□□ 2.83
IFT140Q96RY7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
IFT140Q96RY7 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
IFT140Q96RY7 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
IFT140Q96RY7 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC32.74■■■□□ 2.83
IFT140Q96RY7 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
IFT140Q96RY7 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC32.74■■■□□ 2.83
IFT140Q96RY7 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC32.74■■■□□ 2.83
IFT140Q96RY7 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC32.74■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms