Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS35Q96QK1 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS35Q96QK1 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS35Q96QK1 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS35Q96QK1 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS35Q96QK1 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS35Q96QK1 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS35Q96QK1 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 KRASP1-201ENST00000407852 552 ntBASIC19.53■□□□□ 0.72
VPS35Q96QK1 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS35Q96QK1 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 AC142381.4-202ENST00000563973 229 ntBASIC19.53■□□□□ 0.72
VPS35Q96QK1 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS35Q96QK1 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 TMEM179-206ENST00000616017 1645 ntBASIC19.53■□□□□ 0.72
VPS35Q96QK1 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 NBPF21P-201ENST00000425093 1451 ntBASIC19.53■□□□□ 0.72
VPS35Q96QK1 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS35Q96QK1 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
VPS35Q96QK1 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS35Q96QK1 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS35Q96QK1 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS35Q96QK1 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS35Q96QK1 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS35Q96QK1 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS35Q96QK1 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
VPS35Q96QK1 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS35Q96QK1 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS35Q96QK1 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
VPS35Q96QK1 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS35Q96QK1 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.52■□□□□ 0.72
VPS35Q96QK1 YBX1P10-201ENST00000444752 975 ntBASIC19.52■□□□□ 0.72
VPS35Q96QK1 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
VPS35Q96QK1 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS35Q96QK1 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.52■□□□□ 0.72
VPS35Q96QK1 AC110285.5-201ENST00000611501 352 ntBASIC19.52■□□□□ 0.72
VPS35Q96QK1 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS35Q96QK1 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.52■□□□□ 0.71
VPS35Q96QK1 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.52■□□□□ 0.71
VPS35Q96QK1 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.71
VPS35Q96QK1 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VPS35Q96QK1 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VPS35Q96QK1 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS35Q96QK1 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
VPS35Q96QK1 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS35Q96QK1 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms