Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CNTNAP3BQ96NU0 AL121603.2-201ENST00000557373 2117 ntBASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 AC112907.2-201ENST00000448639 330 ntBASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 AC116050.2-201ENST00000612102 1779 ntBASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CNTNAP3BQ96NU0 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 MIR574-201ENST00000385209 96 ntBASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 AC106795.1-205ENST00000512851 1056 ntBASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 AC010653.2-201ENST00000623505 997 ntBASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CNTNAP3BQ96NU0 AC003102.1-202ENST00000563394 1796 ntBASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 AC092068.2-201ENST00000590491 1708 ntBASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 AC007663.1-201ENST00000438948 1240 ntBASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 BX640515.1-201ENST00000617215 977 ntBASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CNTNAP3BQ96NU0 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 AL662844.1-201ENST00000546340 181 ntBASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 AF228730.7-201ENST00000641842 219 ntBASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CNTNAP3BQ96NU0 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms