Protein–RNA interactions for Protein: Q96NG5

ZNF558, Zinc finger protein 558, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558Q96NG5 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF558Q96NG5 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF558Q96NG5 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF558Q96NG5 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.96■□□□□ 0.95
ZNF558Q96NG5 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 SMG8-203ENST00000578922 2178 ntBASIC20.95■□□□□ 0.94
ZNF558Q96NG5 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 HMGA1P5-201ENST00000412453 271 ntBASIC20.95■□□□□ 0.94
ZNF558Q96NG5 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 AC116562.4-202ENST00000641738 218 ntBASIC20.95■□□□□ 0.94
ZNF558Q96NG5 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 TMEM179-206ENST00000616017 1645 ntBASIC20.95■□□□□ 0.94
ZNF558Q96NG5 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF558Q96NG5 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 AC026310.3-201ENST00000625186 2373 ntBASIC20.94■□□□□ 0.94
ZNF558Q96NG5 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 AK4P3-201ENST00000418260 669 ntBASIC20.94■□□□□ 0.94
ZNF558Q96NG5 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 AC096733.2-201ENST00000609937 1394 ntBASIC20.94■□□□□ 0.94
ZNF558Q96NG5 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
ZNF558Q96NG5 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 CCR12P-201ENST00000446203 998 ntBASIC20.93■□□□□ 0.94
ZNF558Q96NG5 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.93■□□□□ 0.94
ZNF558Q96NG5 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 LINC01238-205ENST00000567549 1107 ntBASIC20.92■□□□□ 0.94
ZNF558Q96NG5 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.92■□□□□ 0.94
ZNF558Q96NG5 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF558Q96NG5 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF558Q96NG5 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF558Q96NG5 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF558Q96NG5 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms