Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.8■□□□□ 0.6
VMP1Q96GC9 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VMP1Q96GC9 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VMP1Q96GC9 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VMP1Q96GC9 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.8■□□□□ 0.6
VMP1Q96GC9 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VMP1Q96GC9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
VMP1Q96GC9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VMP1Q96GC9 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VMP1Q96GC9 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VMP1Q96GC9 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VMP1Q96GC9 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.79■□□□□ 0.6
VMP1Q96GC9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.79■□□□□ 0.6
VMP1Q96GC9 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VMP1Q96GC9 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VMP1Q96GC9 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
VMP1Q96GC9 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VMP1Q96GC9 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
VMP1Q96GC9 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
VMP1Q96GC9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VMP1Q96GC9 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
VMP1Q96GC9 LETM1P2-201ENST00000597330 2178 ntBASIC18.79■□□□□ 0.6
VMP1Q96GC9 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
VMP1Q96GC9 AC007225.1-201ENST00000566331 1836 ntBASIC18.79■□□□□ 0.6
VMP1Q96GC9 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VMP1Q96GC9 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VMP1Q96GC9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VMP1Q96GC9 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.78■□□□□ 0.6
VMP1Q96GC9 POU5F1P3-201ENST00000428824 1078 ntBASIC18.78■□□□□ 0.6
VMP1Q96GC9 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.78■□□□□ 0.6
VMP1Q96GC9 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
VMP1Q96GC9 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.78■□□□□ 0.6
VMP1Q96GC9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.78■□□□□ 0.6
VMP1Q96GC9 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.78■□□□□ 0.6
VMP1Q96GC9 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VMP1Q96GC9 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VMP1Q96GC9 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.77■□□□□ 0.6
VMP1Q96GC9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VMP1Q96GC9 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.77■□□□□ 0.6
VMP1Q96GC9 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VMP1Q96GC9 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.77■□□□□ 0.6
VMP1Q96GC9 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VMP1Q96GC9 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VMP1Q96GC9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VMP1Q96GC9 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VMP1Q96GC9 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VMP1Q96GC9 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VMP1Q96GC9 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.77■□□□□ 0.6
VMP1Q96GC9 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.77■□□□□ 0.6
VMP1Q96GC9 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.77■□□□□ 0.6
VMP1Q96GC9 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VMP1Q96GC9 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VMP1Q96GC9 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VMP1Q96GC9 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VMP1Q96GC9 AC026471.1-201ENST00000564629 3026 ntBASIC18.77■□□□□ 0.6
VMP1Q96GC9 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VMP1Q96GC9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VMP1Q96GC9 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VMP1Q96GC9 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VMP1Q96GC9 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
VMP1Q96GC9 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VMP1Q96GC9 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
VMP1Q96GC9 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VMP1Q96GC9 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VMP1Q96GC9 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VMP1Q96GC9 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VMP1Q96GC9 ESRRAP1-201ENST00000400596 1257 ntBASIC18.76■□□□□ 0.59
VMP1Q96GC9 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.76■□□□□ 0.59
VMP1Q96GC9 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VMP1Q96GC9 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.76■□□□□ 0.59
VMP1Q96GC9 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VMP1Q96GC9 AP003097.1-201ENST00000530657 1135 ntBASIC18.76■□□□□ 0.59
VMP1Q96GC9 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VMP1Q96GC9 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VMP1Q96GC9 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VMP1Q96GC9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
VMP1Q96GC9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
VMP1Q96GC9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
VMP1Q96GC9 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VMP1Q96GC9 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
VMP1Q96GC9 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
VMP1Q96GC9 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.76■□□□□ 0.59
VMP1Q96GC9 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
VMP1Q96GC9 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
VMP1Q96GC9 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms