Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 LINC01126-201ENST00000623515 1646 ntBASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 IDNK-203ENST00000405990 629 ntTSL 2 BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 LONRF2P2-201ENST00000439212 571 ntBASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 CICP6-201ENST00000457191 2729 ntBASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 AL691432.2-201ENST00000607222 2038 ntBASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 KRT18P60-201ENST00000312876 1297 ntBASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 AL034346.1-201ENST00000568244 1277 ntBASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.69■□□□□ 0.1
CLRN3Q8NCR9 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 AC129492.7-201ENST00000622992 756 ntBASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CLRN3Q8NCR9 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.67■□□□□ 0.1
CLRN3Q8NCR9 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 WIZP1-201ENST00000531444 2299 ntBASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms