Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.25■□□□□ 0.51
BEST3Q8N1M1 AL353807.1-201ENST00000427475 662 ntBASIC18.25■□□□□ 0.51
BEST3Q8N1M1 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.25■□□□□ 0.51
BEST3Q8N1M1 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 SMG8-203ENST00000578922 2178 ntBASIC18.24■□□□□ 0.51
BEST3Q8N1M1 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.24■□□□□ 0.51
BEST3Q8N1M1 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BEST3Q8N1M1 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 BX088651.1-201ENST00000540551 451 ntBASIC18.22■□□□□ 0.51
BEST3Q8N1M1 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 CD177P1-201ENST00000606252 935 ntBASIC18.22■□□□□ 0.51
BEST3Q8N1M1 AC026471.5-201ENST00000615068 467 ntBASIC18.22■□□□□ 0.51
BEST3Q8N1M1 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
BEST3Q8N1M1 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
BEST3Q8N1M1 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.21■□□□□ 0.51
BEST3Q8N1M1 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms