Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 AP006587.1-201ENST00000534129 1502 ntBASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 PRKY-204ENST00000533551 1019 ntBASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.7■□□□□ 0.9
SCUBE3Q8IX30 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 AP006294.2-201ENST00000641667 209 ntBASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCUBE3Q8IX30 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.68■□□□□ 0.9
SCUBE3Q8IX30 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 C1QBPP2-201ENST00000528754 825 ntBASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCUBE3Q8IX30 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms