Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC010947.1-201ENST00000623454 693 ntBASIC20.95■□□□□ 0.94
USP41Q3LFD5 AC131212.4-201ENST00000623606 975 ntBASIC20.95■□□□□ 0.94
USP41Q3LFD5 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
USP41Q3LFD5 AC092667.1-201ENST00000434301 2586 ntBASIC20.95■□□□□ 0.94
USP41Q3LFD5 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.95■□□□□ 0.94
USP41Q3LFD5 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP41Q3LFD5 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP41Q3LFD5 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP41Q3LFD5 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP41Q3LFD5 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP41Q3LFD5 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
USP41Q3LFD5 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP41Q3LFD5 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP41Q3LFD5 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.94■□□□□ 0.94
USP41Q3LFD5 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP41Q3LFD5 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP41Q3LFD5 MESTP1-201ENST00000404287 994 ntBASIC20.94■□□□□ 0.94
USP41Q3LFD5 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.94■□□□□ 0.94
USP41Q3LFD5 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.94■□□□□ 0.94
USP41Q3LFD5 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.94■□□□□ 0.94
USP41Q3LFD5 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.94■□□□□ 0.94
USP41Q3LFD5 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP41Q3LFD5 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
USP41Q3LFD5 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP41Q3LFD5 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP41Q3LFD5 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
USP41Q3LFD5 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP41Q3LFD5 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.94■□□□□ 0.94
USP41Q3LFD5 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.93■□□□□ 0.94
USP41Q3LFD5 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.93■□□□□ 0.94
USP41Q3LFD5 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.93■□□□□ 0.94
USP41Q3LFD5 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP41Q3LFD5 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.93■□□□□ 0.94
USP41Q3LFD5 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
USP41Q3LFD5 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP41Q3LFD5 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP41Q3LFD5 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP41Q3LFD5 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP41Q3LFD5 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.93■□□□□ 0.94
USP41Q3LFD5 AC004980.1-204ENST00000429707 299 ntBASIC20.93■□□□□ 0.94
USP41Q3LFD5 B3GAT3P1-201ENST00000471720 806 ntBASIC20.93■□□□□ 0.94
USP41Q3LFD5 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.93■□□□□ 0.94
USP41Q3LFD5 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP41Q3LFD5 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.93■□□□□ 0.94
USP41Q3LFD5 DGCR10-201ENST00000609839 495 ntBASIC20.93■□□□□ 0.94
USP41Q3LFD5 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.93■□□□□ 0.94
USP41Q3LFD5 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
USP41Q3LFD5 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP41Q3LFD5 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP41Q3LFD5 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP41Q3LFD5 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP41Q3LFD5 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP41Q3LFD5 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP41Q3LFD5 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 AC005521.1-201ENST00000393351 872 ntBASIC20.92■□□□□ 0.94
USP41Q3LFD5 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP41Q3LFD5 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP41Q3LFD5 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP41Q3LFD5 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP41Q3LFD5 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP41Q3LFD5 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP41Q3LFD5 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.92■□□□□ 0.94
USP41Q3LFD5 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP41Q3LFD5 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP41Q3LFD5 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
USP41Q3LFD5 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP41Q3LFD5 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
USP41Q3LFD5 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP41Q3LFD5 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP41Q3LFD5 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP41Q3LFD5 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP41Q3LFD5 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.91■□□□□ 0.94
USP41Q3LFD5 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.91■□□□□ 0.94
USP41Q3LFD5 AC113347.1-201ENST00000413321 391 ntBASIC20.91■□□□□ 0.94
USP41Q3LFD5 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.91■□□□□ 0.94
USP41Q3LFD5 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.91■□□□□ 0.94
USP41Q3LFD5 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
USP41Q3LFD5 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP41Q3LFD5 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
USP41Q3LFD5 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.91■□□□□ 0.94
USP41Q3LFD5 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.91■□□□□ 0.94
USP41Q3LFD5 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP41Q3LFD5 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP41Q3LFD5 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP41Q3LFD5 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.9■□□□□ 0.94
USP41Q3LFD5 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
USP41Q3LFD5 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP41Q3LFD5 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms