Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXC1Q12948 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXC1Q12948 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXC1Q12948 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.67■□□□□ 0.58
FOXC1Q12948 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
FOXC1Q12948 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.67■□□□□ 0.58
FOXC1Q12948 HYMAI.1-201ENST00000620949 238 ntBASIC18.67■□□□□ 0.58
FOXC1Q12948 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXC1Q12948 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXC1Q12948 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.67■□□□□ 0.58
FOXC1Q12948 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXC1Q12948 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXC1Q12948 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXC1Q12948 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXC1Q12948 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.66■□□□□ 0.58
FOXC1Q12948 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXC1Q12948 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXC1Q12948 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXC1Q12948 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXC1Q12948 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.66■□□□□ 0.58
FOXC1Q12948 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXC1Q12948 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.66■□□□□ 0.58
FOXC1Q12948 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXC1Q12948 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
FOXC1Q12948 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.66■□□□□ 0.58
FOXC1Q12948 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.66■□□□□ 0.58
FOXC1Q12948 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXC1Q12948 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXC1Q12948 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
FOXC1Q12948 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.66■□□□□ 0.58
FOXC1Q12948 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.66■□□□□ 0.58
FOXC1Q12948 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
FOXC1Q12948 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXC1Q12948 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXC1Q12948 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXC1Q12948 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXC1Q12948 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.65■□□□□ 0.58
FOXC1Q12948 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
FOXC1Q12948 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXC1Q12948 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXC1Q12948 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXC1Q12948 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXC1Q12948 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXC1Q12948 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXC1Q12948 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.65■□□□□ 0.58
FOXC1Q12948 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXC1Q12948 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXC1Q12948 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXC1Q12948 AP003041.3-201ENST00000527151 707 ntBASIC18.65■□□□□ 0.58
FOXC1Q12948 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXC1Q12948 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
FOXC1Q12948 IFNL4P1-201ENST00000607083 540 ntBASIC18.65■□□□□ 0.58
FOXC1Q12948 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXC1Q12948 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXC1Q12948 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXC1Q12948 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXC1Q12948 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXC1Q12948 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXC1Q12948 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
FOXC1Q12948 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
FOXC1Q12948 AC116351.2-201ENST00000606540 1585 ntBASIC18.64■□□□□ 0.58
FOXC1Q12948 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.64■□□□□ 0.57
FOXC1Q12948 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXC1Q12948 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.64■□□□□ 0.57
FOXC1Q12948 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXC1Q12948 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXC1Q12948 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXC1Q12948 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXC1Q12948 STARP1-201ENST00000397973 869 ntBASIC18.64■□□□□ 0.57
FOXC1Q12948 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXC1Q12948 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.64■□□□□ 0.57
FOXC1Q12948 AC079776.4-201ENST00000511039 504 ntBASIC18.64■□□□□ 0.57
FOXC1Q12948 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXC1Q12948 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
FOXC1Q12948 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.64■□□□□ 0.57
FOXC1Q12948 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.64■□□□□ 0.57
FOXC1Q12948 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.64■□□□□ 0.57
FOXC1Q12948 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXC1Q12948 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXC1Q12948 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXC1Q12948 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXC1Q12948 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXC1Q12948 TFP1-202ENST00000475455 1573 ntBASIC18.64■□□□□ 0.57
FOXC1Q12948 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.64■□□□□ 0.57
FOXC1Q12948 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXC1Q12948 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXC1Q12948 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.63■□□□□ 0.57
FOXC1Q12948 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.63■□□□□ 0.57
FOXC1Q12948 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
FOXC1Q12948 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXC1Q12948 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXC1Q12948 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXC1Q12948 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
FOXC1Q12948 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.63■□□□□ 0.57
FOXC1Q12948 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXC1Q12948 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.63■□□□□ 0.57
FOXC1Q12948 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC18.62■□□□□ 0.57
FOXC1Q12948 C1orf229-201ENST00000623686 2258 ntBASIC18.62■□□□□ 0.57
FOXC1Q12948 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
FOXC1Q12948 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms