Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLCN3P51790 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLCN3P51790 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLCN3P51790 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.66■■□□□ 1.06
CLCN3P51790 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLCN3P51790 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.66■■□□□ 1.06
CLCN3P51790 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLCN3P51790 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLCN3P51790 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLCN3P51790 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CLCN3P51790 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLCN3P51790 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLCN3P51790 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLCN3P51790 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLCN3P51790 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLCN3P51790 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CLCN3P51790 AL157384.1-201ENST00000445995 2473 ntBASIC21.65■■□□□ 1.06
CLCN3P51790 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLCN3P51790 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLCN3P51790 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.65■■□□□ 1.06
CLCN3P51790 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLCN3P51790 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLCN3P51790 AC116562.2-201ENST00000507042 360 ntBASIC21.65■■□□□ 1.06
CLCN3P51790 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.65■■□□□ 1.06
CLCN3P51790 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.65■■□□□ 1.06
CLCN3P51790 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.65■■□□□ 1.06
CLCN3P51790 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.65■■□□□ 1.06
CLCN3P51790 AL445675.2-201ENST00000620291 557 ntBASIC21.65■■□□□ 1.06
CLCN3P51790 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.65■■□□□ 1.06
CLCN3P51790 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.65■■□□□ 1.06
CLCN3P51790 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLCN3P51790 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.65■■□□□ 1.06
CLCN3P51790 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.65■■□□□ 1.06
CLCN3P51790 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.65■■□□□ 1.06
CLCN3P51790 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLCN3P51790 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLCN3P51790 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLCN3P51790 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CLCN3P51790 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLCN3P51790 KRT8P9-201ENST00000558927 1449 ntBASIC21.64■■□□□ 1.06
CLCN3P51790 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLCN3P51790 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLCN3P51790 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CLCN3P51790 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLCN3P51790 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLCN3P51790 MMP23A-201ENST00000234610 1017 ntBASIC21.64■■□□□ 1.05
CLCN3P51790 UNC93B2-201ENST00000285383 730 ntBASIC21.64■■□□□ 1.05
CLCN3P51790 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CLCN3P51790 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
CLCN3P51790 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CLCN3P51790 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLCN3P51790 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLCN3P51790 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
CLCN3P51790 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLCN3P51790 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.63■■□□□ 1.05
CLCN3P51790 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLCN3P51790 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLCN3P51790 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.63■■□□□ 1.05
CLCN3P51790 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLCN3P51790 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLCN3P51790 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLCN3P51790 AP001271.2-201ENST00000624018 1556 ntBASIC21.63■■□□□ 1.05
CLCN3P51790 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLCN3P51790 AL390955.1-201ENST00000428694 934 ntBASIC21.63■■□□□ 1.05
CLCN3P51790 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.63■■□□□ 1.05
CLCN3P51790 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLCN3P51790 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.63■■□□□ 1.05
CLCN3P51790 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.63■■□□□ 1.05
CLCN3P51790 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.63■■□□□ 1.05
CLCN3P51790 AL031985.4-201ENST00000642138 673 ntBASIC21.63■■□□□ 1.05
CLCN3P51790 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CLCN3P51790 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.63■■□□□ 1.05
CLCN3P51790 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLCN3P51790 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLCN3P51790 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLCN3P51790 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.63■■□□□ 1.05
CLCN3P51790 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLCN3P51790 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.62■■□□□ 1.05
CLCN3P51790 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.62■■□□□ 1.05
CLCN3P51790 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLCN3P51790 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLCN3P51790 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.62■■□□□ 1.05
CLCN3P51790 LINC01006-201ENST00000333319 2292 ntBASIC21.62■■□□□ 1.05
CLCN3P51790 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.62■■□□□ 1.05
CLCN3P51790 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLCN3P51790 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLCN3P51790 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLCN3P51790 MESTP1-201ENST00000404287 994 ntBASIC21.62■■□□□ 1.05
CLCN3P51790 MIR1238-201ENST00000408483 83 ntBASIC21.62■■□□□ 1.05
CLCN3P51790 AC004980.1-204ENST00000429707 299 ntBASIC21.62■■□□□ 1.05
CLCN3P51790 AC012306.2-201ENST00000609350 630 ntBASIC21.62■■□□□ 1.05
CLCN3P51790 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLCN3P51790 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CLCN3P51790 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLCN3P51790 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CLCN3P51790 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLCN3P51790 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.62■■□□□ 1.05
CLCN3P51790 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLCN3P51790 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLCN3P51790 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms