Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 FAM207BP-201ENST00000447172 505 ntBASIC19.84■□□□□ 0.77
TNFRSF4P43489 AC008040.2-201ENST00000461049 708 ntBASIC19.84■□□□□ 0.77
TNFRSF4P43489 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TNFRSF4P43489 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 AC010203.1-204ENST00000548782 407 ntBASIC19.84■□□□□ 0.77
TNFRSF4P43489 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TNFRSF4P43489 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TNFRSF4P43489 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TNFRSF4P43489 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TNFRSF4P43489 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TNFRSF4P43489 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TNFRSF4P43489 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TNFRSF4P43489 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TNFRSF4P43489 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
TNFRSF4P43489 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TNFRSF4P43489 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.83■□□□□ 0.77
TNFRSF4P43489 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
TNFRSF4P43489 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.83■□□□□ 0.77
TNFRSF4P43489 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TNFRSF4P43489 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TNFRSF4P43489 DUX4L26-201ENST00000489078 1255 ntBASIC19.83■□□□□ 0.77
TNFRSF4P43489 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.83■□□□□ 0.77
TNFRSF4P43489 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.83■□□□□ 0.77
TNFRSF4P43489 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.77
TNFRSF4P43489 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.83■□□□□ 0.77
TNFRSF4P43489 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.83■□□□□ 0.76
TNFRSF4P43489 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TNFRSF4P43489 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TNFRSF4P43489 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.83■□□□□ 0.76
TNFRSF4P43489 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
TNFRSF4P43489 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TNFRSF4P43489 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
TNFRSF4P43489 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TNFRSF4P43489 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TNFRSF4P43489 AC096733.2-201ENST00000609937 1394 ntBASIC19.83■□□□□ 0.76
TNFRSF4P43489 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFRSF4P43489 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFRSF4P43489 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFRSF4P43489 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFRSF4P43489 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFRSF4P43489 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFRSF4P43489 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFRSF4P43489 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TNFRSF4P43489 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TNFRSF4P43489 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.82■□□□□ 0.76
TNFRSF4P43489 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TNFRSF4P43489 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
TNFRSF4P43489 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.81■□□□□ 0.76
TNFRSF4P43489 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.81■□□□□ 0.76
TNFRSF4P43489 MFAP1P1-201ENST00000442257 1255 ntBASIC19.81■□□□□ 0.76
TNFRSF4P43489 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TNFRSF4P43489 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TNFRSF4P43489 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFRSF4P43489 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFRSF4P43489 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFRSF4P43489 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFRSF4P43489 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFRSF4P43489 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFRSF4P43489 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFRSF4P43489 CCR12P-201ENST00000446203 998 ntBASIC19.8■□□□□ 0.76
TNFRSF4P43489 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms