Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSR1P43307 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSR1P43307 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SSR1P43307 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SSR1P43307 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.87■□□□□ 0.93
SSR1P43307 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.87■□□□□ 0.93
SSR1P43307 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSR1P43307 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.87■□□□□ 0.93
SSR1P43307 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SSR1P43307 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.87■□□□□ 0.93
SSR1P43307 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SSR1P43307 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SSR1P43307 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSR1P43307 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSR1P43307 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSR1P43307 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSR1P43307 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSR1P43307 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSR1P43307 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.86■□□□□ 0.93
SSR1P43307 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.86■□□□□ 0.93
SSR1P43307 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SSR1P43307 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SSR1P43307 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSR1P43307 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SSR1P43307 BX276092.2-201ENST00000417668 665 ntBASIC20.86■□□□□ 0.93
SSR1P43307 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.86■□□□□ 0.93
SSR1P43307 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.86■□□□□ 0.93
SSR1P43307 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.86■□□□□ 0.93
SSR1P43307 AC133552.2-202ENST00000575694 574 ntBASIC20.86■□□□□ 0.93
SSR1P43307 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
SSR1P43307 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSR1P43307 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SSR1P43307 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSR1P43307 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSR1P43307 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSR1P43307 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.86■□□□□ 0.93
SSR1P43307 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSR1P43307 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSR1P43307 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.86■□□□□ 0.93
SSR1P43307 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSR1P43307 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.86■□□□□ 0.93
SSR1P43307 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SSR1P43307 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC20.85■□□□□ 0.93
SSR1P43307 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSR1P43307 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SSR1P43307 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSR1P43307 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSR1P43307 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSR1P43307 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SSR1P43307 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.85■□□□□ 0.93
SSR1P43307 AL050303.2-201ENST00000619798 666 ntBASIC20.85■□□□□ 0.93
SSR1P43307 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSR1P43307 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSR1P43307 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.85■□□□□ 0.93
SSR1P43307 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSR1P43307 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSR1P43307 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.85■□□□□ 0.93
SSR1P43307 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.84■□□□□ 0.93
SSR1P43307 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.84■□□□□ 0.93
SSR1P43307 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.84■□□□□ 0.93
SSR1P43307 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.84■□□□□ 0.93
SSR1P43307 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.84■□□□□ 0.93
SSR1P43307 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.84■□□□□ 0.93
SSR1P43307 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSR1P43307 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.83■□□□□ 0.93
SSR1P43307 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSR1P43307 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSR1P43307 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSR1P43307 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SSR1P43307 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.83■□□□□ 0.93
SSR1P43307 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSR1P43307 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.93
SSR1P43307 AC006970.2-201ENST00000450065 779 ntBASIC20.83■□□□□ 0.93
SSR1P43307 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.83■□□□□ 0.93
SSR1P43307 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.83■□□□□ 0.93
SSR1P43307 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
SSR1P43307 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SSR1P43307 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.83■□□□□ 0.92
SSR1P43307 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SSR1P43307 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SSR1P43307 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SSR1P43307 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SSR1P43307 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.82■□□□□ 0.92
SSR1P43307 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SSR1P43307 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SSR1P43307 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SSR1P43307 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SSR1P43307 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms