Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL9A1P20849 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.31■□□□□ 0.84
COL9A1P20849 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL9A1P20849 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.31■□□□□ 0.84
COL9A1P20849 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
COL9A1P20849 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL9A1P20849 AC092329.2-201ENST00000598402 547 ntBASIC20.31■□□□□ 0.84
COL9A1P20849 IFNL4P1-201ENST00000607083 540 ntBASIC20.31■□□□□ 0.84
COL9A1P20849 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL9A1P20849 AL031432.5-201ENST00000641059 760 ntBASIC20.31■□□□□ 0.84
COL9A1P20849 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL9A1P20849 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL9A1P20849 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.31■□□□□ 0.84
COL9A1P20849 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL9A1P20849 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.31■□□□□ 0.84
COL9A1P20849 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL9A1P20849 AL049796.1-201ENST00000565336 1766 ntBASIC20.31■□□□□ 0.84
COL9A1P20849 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL9A1P20849 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL9A1P20849 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 FSCN1P1-201ENST00000568912 1481 ntBASIC20.3■□□□□ 0.84
COL9A1P20849 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COL9A1P20849 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.3■□□□□ 0.84
COL9A1P20849 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.3■□□□□ 0.84
COL9A1P20849 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL9A1P20849 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL9A1P20849 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.3■□□□□ 0.84
COL9A1P20849 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.3■□□□□ 0.84
COL9A1P20849 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.3■□□□□ 0.84
COL9A1P20849 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.3■□□□□ 0.84
COL9A1P20849 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
COL9A1P20849 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL9A1P20849 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.3■□□□□ 0.84
COL9A1P20849 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.3■□□□□ 0.84
COL9A1P20849 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.3■□□□□ 0.84
COL9A1P20849 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 AC121338.2-201ENST00000622535 1744 ntBASIC20.3■□□□□ 0.84
COL9A1P20849 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL9A1P20849 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL9A1P20849 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL9A1P20849 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL9A1P20849 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL9A1P20849 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL9A1P20849 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL9A1P20849 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.29■□□□□ 0.84
COL9A1P20849 AC027796.2-201ENST00000575326 344 ntBASIC20.29■□□□□ 0.84
COL9A1P20849 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL9A1P20849 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL9A1P20849 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL9A1P20849 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL9A1P20849 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.29■□□□□ 0.84
COL9A1P20849 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL9A1P20849 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL9A1P20849 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.28■□□□□ 0.84
COL9A1P20849 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL9A1P20849 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL9A1P20849 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL9A1P20849 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.28■□□□□ 0.84
COL9A1P20849 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.28■□□□□ 0.84
COL9A1P20849 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.28■□□□□ 0.84
COL9A1P20849 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.28■□□□□ 0.84
COL9A1P20849 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.28■□□□□ 0.84
COL9A1P20849 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.28■□□□□ 0.84
COL9A1P20849 AC133561.1-201ENST00000568600 2415 ntBASIC20.28■□□□□ 0.84
COL9A1P20849 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL9A1P20849 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
COL9A1P20849 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL9A1P20849 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL9A1P20849 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL9A1P20849 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL9A1P20849 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
COL9A1P20849 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
COL9A1P20849 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL9A1P20849 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL9A1P20849 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL9A1P20849 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
COL9A1P20849 MIR574-201ENST00000385209 96 ntBASIC20.27■□□□□ 0.84
COL9A1P20849 AC079781.3-201ENST00000449110 356 ntBASIC20.27■□□□□ 0.84
COL9A1P20849 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
COL9A1P20849 AC097488.1-201ENST00000507834 756 ntBASIC20.27■□□□□ 0.84
COL9A1P20849 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.27■□□□□ 0.84
COL9A1P20849 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.27■□□□□ 0.84
COL9A1P20849 SLC25A6P4-201ENST00000586535 553 ntBASIC20.27■□□□□ 0.84
COL9A1P20849 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.27■□□□□ 0.84
COL9A1P20849 BX640515.1-201ENST00000617215 977 ntBASIC20.27■□□□□ 0.84
COL9A1P20849 AL031985.4-201ENST00000642138 673 ntBASIC20.27■□□□□ 0.84
COL9A1P20849 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL9A1P20849 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
COL9A1P20849 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms