Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGA1P17096 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGA1P17096 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.46■□□□□ 0.87
HMGA1P17096 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGA1P17096 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.46■□□□□ 0.87
HMGA1P17096 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGA1P17096 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
HMGA1P17096 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
HMGA1P17096 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.46■□□□□ 0.87
HMGA1P17096 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.46■□□□□ 0.87
HMGA1P17096 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGA1P17096 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGA1P17096 AC092667.1-201ENST00000434301 2586 ntBASIC20.46■□□□□ 0.87
HMGA1P17096 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGA1P17096 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
HMGA1P17096 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGA1P17096 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGA1P17096 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.46■□□□□ 0.87
HMGA1P17096 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGA1P17096 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
HMGA1P17096 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
HMGA1P17096 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGA1P17096 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
HMGA1P17096 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.45■□□□□ 0.86
HMGA1P17096 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGA1P17096 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.45■□□□□ 0.86
HMGA1P17096 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.45■□□□□ 0.86
HMGA1P17096 AC130371.2-201ENST00000619443 611 ntBASIC20.45■□□□□ 0.86
HMGA1P17096 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
HMGA1P17096 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGA1P17096 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.44■□□□□ 0.86
HMGA1P17096 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
HMGA1P17096 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.44■□□□□ 0.86
HMGA1P17096 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.44■□□□□ 0.86
HMGA1P17096 AC008040.2-201ENST00000461049 708 ntBASIC20.44■□□□□ 0.86
HMGA1P17096 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.44■□□□□ 0.86
HMGA1P17096 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.44■□□□□ 0.86
HMGA1P17096 DGCR10-201ENST00000609839 495 ntBASIC20.44■□□□□ 0.86
HMGA1P17096 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.44■□□□□ 0.86
HMGA1P17096 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.44■□□□□ 0.86
HMGA1P17096 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
HMGA1P17096 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.44■□□□□ 0.86
HMGA1P17096 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGA1P17096 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.44■□□□□ 0.86
HMGA1P17096 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGA1P17096 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.43■□□□□ 0.86
HMGA1P17096 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGA1P17096 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGA1P17096 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.43■□□□□ 0.86
HMGA1P17096 RCC2P6-201ENST00000526625 1557 ntBASIC20.43■□□□□ 0.86
HMGA1P17096 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
HMGA1P17096 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
HMGA1P17096 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGA1P17096 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
HMGA1P17096 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.43■□□□□ 0.86
HMGA1P17096 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
HMGA1P17096 MIR1224-201ENST00000408193 85 ntBASIC20.43■□□□□ 0.86
HMGA1P17096 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.43■□□□□ 0.86
HMGA1P17096 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGA1P17096 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.43■□□□□ 0.86
HMGA1P17096 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.43■□□□□ 0.86
HMGA1P17096 NAPSB-206ENST00000562112 1266 ntBASIC20.43■□□□□ 0.86
HMGA1P17096 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.43■□□□□ 0.86
HMGA1P17096 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGA1P17096 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGA1P17096 LINC01568-207ENST00000641790 1380 ntBASIC20.43■□□□□ 0.86
HMGA1P17096 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
HMGA1P17096 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGA1P17096 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGA1P17096 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGA1P17096 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGA1P17096 AC009237.14-201ENST00000609975 1594 ntBASIC20.42■□□□□ 0.86
HMGA1P17096 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.42■□□□□ 0.86
HMGA1P17096 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HMGA1P17096 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms