Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS4P0CW20 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
LIMS4P0CW20 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
LIMS4P0CW20 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS4P0CW20 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS4P0CW20 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMS4P0CW20 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.48■□□□□ 0.39
LIMS4P0CW20 PHGDH-210ENST00000641115 1638 ntBASIC17.48■□□□□ 0.39
LIMS4P0CW20 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LIMS4P0CW20 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
LIMS4P0CW20 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
LIMS4P0CW20 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
LIMS4P0CW20 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMS4P0CW20 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 AC104581.1-202ENST00000635932 2618 ntBASIC17.48■□□□□ 0.39
LIMS4P0CW20 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMS4P0CW20 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMS4P0CW20 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMS4P0CW20 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMS4P0CW20 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.47■□□□□ 0.39
LIMS4P0CW20 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMS4P0CW20 MYCNOS-205ENST00000641950 531 ntBASIC17.47■□□□□ 0.39
LIMS4P0CW20 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
LIMS4P0CW20 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
LIMS4P0CW20 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 AC006333.2-201ENST00000607957 2099 ntBASIC17.47■□□□□ 0.39
LIMS4P0CW20 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
LIMS4P0CW20 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMS4P0CW20 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
LIMS4P0CW20 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMS4P0CW20 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMS4P0CW20 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LIMS4P0CW20 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.46■□□□□ 0.39
LIMS4P0CW20 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
LIMS4P0CW20 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
LIMS4P0CW20 AC009113.1-201ENST00000570267 2443 ntBASIC17.46■□□□□ 0.39
LIMS4P0CW20 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.46■□□□□ 0.39
LIMS4P0CW20 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMS4P0CW20 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 KRT18P14-201ENST00000534205 1250 ntBASIC17.46■□□□□ 0.39
LIMS4P0CW20 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.46■□□□□ 0.39
LIMS4P0CW20 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 AC016405.3-201ENST00000607710 860 ntBASIC17.46■□□□□ 0.39
LIMS4P0CW20 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LIMS4P0CW20 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LIMS4P0CW20 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMS4P0CW20 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
LIMS4P0CW20 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
LIMS4P0CW20 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
LIMS4P0CW20 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMS4P0CW20 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMS4P0CW20 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMS4P0CW20 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMS4P0CW20 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms