Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
MMP3P08254 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
MMP3P08254 AC004951.3-201ENST00000418645 1148 ntBASIC21.85■■□□□ 1.09
MMP3P08254 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.85■■□□□ 1.09
MMP3P08254 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
MMP3P08254 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
MMP3P08254 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.85■■□□□ 1.09
MMP3P08254 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MMP3P08254 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.85■■□□□ 1.09
MMP3P08254 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MMP3P08254 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
MMP3P08254 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MMP3P08254 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
MMP3P08254 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21.85■■□□□ 1.09
MMP3P08254 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MMP3P08254 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.85■■□□□ 1.09
MMP3P08254 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.85■■□□□ 1.09
MMP3P08254 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.85■■□□□ 1.09
MMP3P08254 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.84■■□□□ 1.09
MMP3P08254 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.84■■□□□ 1.09
MMP3P08254 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MMP3P08254 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.84■■□□□ 1.09
MMP3P08254 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MMP3P08254 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
MMP3P08254 INGX-201ENST00000359239 846 ntBASIC21.84■■□□□ 1.09
MMP3P08254 AC104076.2-201ENST00000448912 469 ntBASIC21.84■■□□□ 1.09
MMP3P08254 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.84■■□□□ 1.09
MMP3P08254 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.84■■□□□ 1.09
MMP3P08254 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.84■■□□□ 1.09
MMP3P08254 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.84■■□□□ 1.09
MMP3P08254 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MMP3P08254 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MMP3P08254 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MMP3P08254 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MMP3P08254 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MMP3P08254 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MMP3P08254 KRT8P8-201ENST00000434750 1448 ntBASIC21.83■■□□□ 1.09
MMP3P08254 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MMP3P08254 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
MMP3P08254 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
MMP3P08254 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.83■■□□□ 1.09
MMP3P08254 DUX4L26-201ENST00000489078 1255 ntBASIC21.83■■□□□ 1.09
MMP3P08254 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.09
MMP3P08254 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.83■■□□□ 1.09
MMP3P08254 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
MMP3P08254 FAM87A-204ENST00000613235 858 ntBASIC21.83■■□□□ 1.09
MMP3P08254 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MMP3P08254 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.83■■□□□ 1.09
MMP3P08254 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
MMP3P08254 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.83■■□□□ 1.08
MMP3P08254 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
MMP3P08254 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
MMP3P08254 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
MMP3P08254 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
MMP3P08254 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.08
MMP3P08254 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
MMP3P08254 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.82■■□□□ 1.08
MMP3P08254 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.82■■□□□ 1.08
MMP3P08254 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.82■■□□□ 1.08
MMP3P08254 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 AC128688.1-201ENST00000487626 519 ntBASIC21.82■■□□□ 1.08
MMP3P08254 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.82■■□□□ 1.08
MMP3P08254 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.82■■□□□ 1.08
MMP3P08254 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.82■■□□□ 1.08
MMP3P08254 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
MMP3P08254 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MMP3P08254 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.81■■□□□ 1.08
MMP3P08254 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MMP3P08254 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.81■■□□□ 1.08
MMP3P08254 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MMP3P08254 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MMP3P08254 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MMP3P08254 LIN28AP1-201ENST00000429574 405 ntBASIC21.81■■□□□ 1.08
MMP3P08254 FAM207BP-201ENST00000447172 505 ntBASIC21.81■■□□□ 1.08
MMP3P08254 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.81■■□□□ 1.08
MMP3P08254 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MMP3P08254 Z85996.1-201ENST00000494644 937 ntBASIC21.81■■□□□ 1.08
MMP3P08254 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.81■■□□□ 1.08
MMP3P08254 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.81■■□□□ 1.08
MMP3P08254 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC21.81■■□□□ 1.08
MMP3P08254 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.81■■□□□ 1.08
MMP3P08254 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.81■■□□□ 1.08
MMP3P08254 AC006011.2-201ENST00000621313 1158 ntBASIC21.81■■□□□ 1.08
MMP3P08254 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
MMP3P08254 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MMP3P08254 AC096733.2-201ENST00000609937 1394 ntBASIC21.81■■□□□ 1.08
MMP3P08254 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.81■■□□□ 1.08
MMP3P08254 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms