Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.94■□□□□ 0.62
LDLRP01130 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
LDLRP01130 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
LDLRP01130 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
LDLRP01130 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
LDLRP01130 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.93■□□□□ 0.62
LDLRP01130 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.93■□□□□ 0.62
LDLRP01130 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.93■□□□□ 0.62
LDLRP01130 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.93■□□□□ 0.62
LDLRP01130 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.93■□□□□ 0.62
LDLRP01130 AC091874.3-201ENST00000512672 1195 ntBASIC18.93■□□□□ 0.62
LDLRP01130 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.93■□□□□ 0.62
LDLRP01130 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.93■□□□□ 0.62
LDLRP01130 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.93■□□□□ 0.62
LDLRP01130 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.93■□□□□ 0.62
LDLRP01130 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
LDLRP01130 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
LDLRP01130 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDLRP01130 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.93■□□□□ 0.62
LDLRP01130 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.93■□□□□ 0.62
LDLRP01130 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDLRP01130 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDLRP01130 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
LDLRP01130 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.92■□□□□ 0.62
LDLRP01130 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDLRP01130 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.92■□□□□ 0.62
LDLRP01130 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDLRP01130 AC120498.9-201ENST00000339021 3867 ntBASIC18.92■□□□□ 0.62
LDLRP01130 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDLRP01130 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.92■□□□□ 0.62
LDLRP01130 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
LDLRP01130 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDLRP01130 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDLRP01130 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDLRP01130 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LDLRP01130 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.92■□□□□ 0.62
LDLRP01130 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
LDLRP01130 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.92■□□□□ 0.62
LDLRP01130 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.92■□□□□ 0.62
LDLRP01130 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDLRP01130 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.92■□□□□ 0.62
LDLRP01130 AC061975.6-201ENST00000579045 1553 ntBASIC18.92■□□□□ 0.62
LDLRP01130 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.92■□□□□ 0.62
LDLRP01130 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
LDLRP01130 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.91■□□□□ 0.62
LDLRP01130 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LDLRP01130 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LDLRP01130 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 AC026366.1-201ENST00000488803 879 ntBASIC18.91■□□□□ 0.62
LDLRP01130 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.91■□□□□ 0.62
LDLRP01130 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.91■□□□□ 0.62
LDLRP01130 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
LDLRP01130 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.91■□□□□ 0.62
LDLRP01130 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
LDLRP01130 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.91■□□□□ 0.62
LDLRP01130 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDLRP01130 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LDLRP01130 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
LDLRP01130 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LDLRP01130 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
LDLRP01130 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LDLRP01130 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LDLRP01130 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LDLRP01130 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LDLRP01130 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.9■□□□□ 0.62
LDLRP01130 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms