Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PRKNO60260 AC116351.2-201ENST00000606540 1585 ntBASIC18.34■□□□□ 0.53
PRKNO60260 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PRKNO60260 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
PRKNO60260 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.33■□□□□ 0.53
PRKNO60260 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
PRKNO60260 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PRKNO60260 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
PRKNO60260 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
PRKNO60260 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
PRKNO60260 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.33■□□□□ 0.52
PRKNO60260 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.33■□□□□ 0.52
PRKNO60260 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PRKNO60260 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.33■□□□□ 0.52
PRKNO60260 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PRKNO60260 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.33■□□□□ 0.52
PRKNO60260 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.33■□□□□ 0.52
PRKNO60260 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
PRKNO60260 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
PRKNO60260 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.33■□□□□ 0.52
PRKNO60260 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.33■□□□□ 0.52
PRKNO60260 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
PRKNO60260 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.33■□□□□ 0.52
PRKNO60260 PHGDH-210ENST00000641115 1638 ntBASIC18.33■□□□□ 0.52
PRKNO60260 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PRKNO60260 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PRKNO60260 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.33■□□□□ 0.52
PRKNO60260 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
PRKNO60260 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.33■□□□□ 0.52
PRKNO60260 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PRKNO60260 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.33■□□□□ 0.52
PRKNO60260 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.33■□□□□ 0.52
PRKNO60260 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PRKNO60260 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PRKNO60260 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PRKNO60260 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.32■□□□□ 0.52
PRKNO60260 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.32■□□□□ 0.52
PRKNO60260 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PRKNO60260 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PRKNO60260 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PRKNO60260 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.32■□□□□ 0.52
PRKNO60260 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PRKNO60260 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
PRKNO60260 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
PRKNO60260 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PRKNO60260 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PRKNO60260 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PRKNO60260 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.32■□□□□ 0.52
PRKNO60260 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.32■□□□□ 0.52
PRKNO60260 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.32■□□□□ 0.52
PRKNO60260 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.32■□□□□ 0.52
PRKNO60260 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.32■□□□□ 0.52
PRKNO60260 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PRKNO60260 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PRKNO60260 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.32■□□□□ 0.52
PRKNO60260 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
PRKNO60260 NBPF21P-201ENST00000425093 1451 ntBASIC18.32■□□□□ 0.52
PRKNO60260 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PRKNO60260 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.32■□□□□ 0.52
PRKNO60260 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PRKNO60260 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.31■□□□□ 0.52
PRKNO60260 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.31■□□□□ 0.52
PRKNO60260 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PRKNO60260 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.31■□□□□ 0.52
PRKNO60260 TFP1-202ENST00000475455 1573 ntBASIC18.31■□□□□ 0.52
PRKNO60260 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.31■□□□□ 0.52
PRKNO60260 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PRKNO60260 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PRKNO60260 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PRKNO60260 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.31■□□□□ 0.52
PRKNO60260 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.31■□□□□ 0.52
PRKNO60260 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.31■□□□□ 0.52
PRKNO60260 AC008550.1-201ENST00000511500 884 ntBASIC18.31■□□□□ 0.52
PRKNO60260 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.31■□□□□ 0.52
PRKNO60260 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PRKNO60260 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.31■□□□□ 0.52
PRKNO60260 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.31■□□□□ 0.52
PRKNO60260 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PRKNO60260 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
PRKNO60260 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
PRKNO60260 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PRKNO60260 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PRKNO60260 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.3■□□□□ 0.52
PRKNO60260 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.3■□□□□ 0.52
PRKNO60260 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.3■□□□□ 0.52
PRKNO60260 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PRKNO60260 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PRKNO60260 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.3■□□□□ 0.52
PRKNO60260 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.3■□□□□ 0.52
PRKNO60260 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
PRKNO60260 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PRKNO60260 Z99916.2-201ENST00000604037 246 ntBASIC18.3■□□□□ 0.52
PRKNO60260 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms