Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 MYC-209ENST00000641252 345 ntBASIC17.36■□□□□ 0.37
SGCEO43556 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.36■□□□□ 0.37
SGCEO43556 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.36■□□□□ 0.37
SGCEO43556 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.36■□□□□ 0.37
SGCEO43556 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.36■□□□□ 0.37
SGCEO43556 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SGCEO43556 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
SGCEO43556 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 PHGDH-210ENST00000641115 1638 ntBASIC17.36■□□□□ 0.37
SGCEO43556 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SGCEO43556 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.35■□□□□ 0.37
SGCEO43556 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SGCEO43556 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SGCEO43556 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SGCEO43556 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
SGCEO43556 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SGCEO43556 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.35■□□□□ 0.37
SGCEO43556 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.35■□□□□ 0.37
SGCEO43556 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.35■□□□□ 0.37
SGCEO43556 AC073210.2-201ENST00000430369 194 ntBASIC17.35■□□□□ 0.37
SGCEO43556 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.35■□□□□ 0.37
SGCEO43556 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.35■□□□□ 0.37
SGCEO43556 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SGCEO43556 AC005829.2-201ENST00000571422 1056 ntBASIC17.35■□□□□ 0.37
SGCEO43556 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.35■□□□□ 0.37
SGCEO43556 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
SGCEO43556 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SGCEO43556 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SGCEO43556 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SGCEO43556 AC009237.14-201ENST00000609975 1594 ntBASIC17.35■□□□□ 0.37
SGCEO43556 AP001271.2-201ENST00000624018 1556 ntBASIC17.35■□□□□ 0.37
SGCEO43556 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SGCEO43556 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SGCEO43556 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
SGCEO43556 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SGCEO43556 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SGCEO43556 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SGCEO43556 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 AC087289.5-201ENST00000586076 3175 ntBASIC17.34■□□□□ 0.37
SGCEO43556 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.34■□□□□ 0.37
SGCEO43556 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.34■□□□□ 0.37
SGCEO43556 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.34■□□□□ 0.37
SGCEO43556 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.34■□□□□ 0.37
SGCEO43556 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
SGCEO43556 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SGCEO43556 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.34■□□□□ 0.37
SGCEO43556 AC069152.1-201ENST00000438030 544 ntBASIC17.34■□□□□ 0.37
SGCEO43556 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.34■□□□□ 0.37
SGCEO43556 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
SGCEO43556 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.34■□□□□ 0.37
SGCEO43556 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.34■□□□□ 0.37
SGCEO43556 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.34■□□□□ 0.37
SGCEO43556 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.34■□□□□ 0.37
SGCEO43556 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 AC142086.2-201ENST00000569753 217 ntBASIC17.34■□□□□ 0.37
SGCEO43556 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.34■□□□□ 0.37
SGCEO43556 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SGCEO43556 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SGCEO43556 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.33■□□□□ 0.37
SGCEO43556 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SGCEO43556 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
SGCEO43556 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SGCEO43556 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SGCEO43556 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SGCEO43556 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
SGCEO43556 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SGCEO43556 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
SGCEO43556 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SGCEO43556 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SGCEO43556 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.33■□□□□ 0.36
SGCEO43556 HLA-L-209ENST00000420110 1011 ntBASIC17.33■□□□□ 0.36
SGCEO43556 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SGCEO43556 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SGCEO43556 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.33■□□□□ 0.36
SGCEO43556 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SGCEO43556 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SGCEO43556 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.33■□□□□ 0.36
SGCEO43556 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
SGCEO43556 HLA-B-256ENST00000639848 1089 ntBASIC17.33■□□□□ 0.36
SGCEO43556 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SGCEO43556 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SGCEO43556 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SGCEO43556 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SGCEO43556 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms