Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL6A6A6NMZ7 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A6A6NMZ7 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A6A6NMZ7 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL6A6A6NMZ7 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.78■□□□□ 0.44
COL6A6A6NMZ7 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A6A6NMZ7 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.78■□□□□ 0.44
COL6A6A6NMZ7 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COL6A6A6NMZ7 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
COL6A6A6NMZ7 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A6A6NMZ7 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A6A6NMZ7 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A6A6NMZ7 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC17.77■□□□□ 0.44
COL6A6A6NMZ7 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 AC008040.2-201ENST00000461049 708 ntBASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.77■□□□□ 0.43
COL6A6A6NMZ7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 HBZP1-201ENST00000354915 429 ntBASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 AL353719.1-201ENST00000566847 864 ntBASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 AL732292.2-201ENST00000609649 430 ntBASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.76■□□□□ 0.43
COL6A6A6NMZ7 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 AP000523.1-201ENST00000398242 1049 ntBASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 NEK4P2-201ENST00000580004 1012 ntBASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 AC120114.3-201ENST00000611923 658 ntBASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 HMGN1P19-201ENST00000436976 333 ntBASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC17.75■□□□□ 0.43
COL6A6A6NMZ7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 AC106795.1-205ENST00000512851 1056 ntBASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 AP002469.2-201ENST00000531724 424 ntBASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms