Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CCDC88BA6NC98 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CCDC88BA6NC98 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CCDC88BA6NC98 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CCDC88BA6NC98 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC34.28■■■■□ 3.08
CCDC88BA6NC98 LINC01238-205ENST00000567549 1107 ntBASIC34.28■■■■□ 3.08
CCDC88BA6NC98 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CCDC88BA6NC98 AC141257.4-201ENST00000634557 245 ntBASIC34.28■■■■□ 3.08
CCDC88BA6NC98 AC136944.6-201ENST00000634818 245 ntBASIC34.28■■■■□ 3.08
CCDC88BA6NC98 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC34.28■■■■□ 3.08
CCDC88BA6NC98 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC34.28■■■■□ 3.08
CCDC88BA6NC98 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CCDC88BA6NC98 BX119927.1-201ENST00000636596 1552 ntBASIC34.27■■■■□ 3.08
CCDC88BA6NC98 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 WDR88-203ENST00000592765 651 ntTSL 5 BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC34.27■■■■□ 3.08
CCDC88BA6NC98 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC34.26■■■■□ 3.08
CCDC88BA6NC98 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC34.26■■■■□ 3.08
CCDC88BA6NC98 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC34.26■■■■□ 3.08
CCDC88BA6NC98 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.08
CCDC88BA6NC98 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.08
CCDC88BA6NC98 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC34.26■■■■□ 3.08
CCDC88BA6NC98 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC34.26■■■■□ 3.07
CCDC88BA6NC98 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC34.26■■■■□ 3.07
CCDC88BA6NC98 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC34.26■■■■□ 3.07
CCDC88BA6NC98 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC34.26■■■■□ 3.07
CCDC88BA6NC98 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC34.26■■■■□ 3.07
CCDC88BA6NC98 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC34.26■■■■□ 3.07
CCDC88BA6NC98 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC34.26■■■■□ 3.07
CCDC88BA6NC98 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC34.26■■■■□ 3.07
CCDC88BA6NC98 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC34.26■■■■□ 3.07
CCDC88BA6NC98 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC34.26■■■■□ 3.07
CCDC88BA6NC98 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
CCDC88BA6NC98 KRT8P8-201ENST00000434750 1448 ntBASIC34.25■■■■□ 3.07
CCDC88BA6NC98 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
CCDC88BA6NC98 STK25-234ENST00000535007 2459 ntTSL 2 BASIC34.25■■■■□ 3.07
CCDC88BA6NC98 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC34.25■■■■□ 3.07
CCDC88BA6NC98 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
CCDC88BA6NC98 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC34.25■■■■□ 3.07
CCDC88BA6NC98 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC34.25■■■■□ 3.07
CCDC88BA6NC98 TSPY5P-201ENST00000426936 936 ntBASIC34.25■■■■□ 3.07
CCDC88BA6NC98 COX11P1-201ENST00000489116 835 ntBASIC34.25■■■■□ 3.07
CCDC88BA6NC98 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC34.25■■■■□ 3.07
CCDC88BA6NC98 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
CCDC88BA6NC98 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
CCDC88BA6NC98 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC34.24■■■■□ 3.07
CCDC88BA6NC98 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
CCDC88BA6NC98 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
CCDC88BA6NC98 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC34.24■■■■□ 3.07
CCDC88BA6NC98 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC34.24■■■■□ 3.07
CCDC88BA6NC98 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC34.24■■■■□ 3.07
CCDC88BA6NC98 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC34.24■■■■□ 3.07
CCDC88BA6NC98 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 SMG8-203ENST00000578922 2178 ntBASIC34.23■■■■□ 3.07
CCDC88BA6NC98 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 TOLLIP-AS1-201ENST00000530897 939 ntBASIC34.23■■■■□ 3.07
CCDC88BA6NC98 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 AC026310.3-201ENST00000625186 2373 ntBASIC34.23■■■■□ 3.07
CCDC88BA6NC98 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC34.23■■■■□ 3.07
CCDC88BA6NC98 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
CCDC88BA6NC98 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
CCDC88BA6NC98 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC34.22■■■■□ 3.07
CCDC88BA6NC98 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
CCDC88BA6NC98 DERL1-203ENST00000419562 918 ntTSL 2 BASIC34.22■■■■□ 3.07
CCDC88BA6NC98 AC009947.2-201ENST00000444014 672 ntBASIC34.22■■■■□ 3.07
CCDC88BA6NC98 FAM86EP-206ENST00000510506 987 ntBASIC34.22■■■■□ 3.07
CCDC88BA6NC98 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC34.22■■■■□ 3.07
CCDC88BA6NC98 GPX4-207ENST00000589115 812 ntTSL 2 BASIC34.22■■■■□ 3.07
CCDC88BA6NC98 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC34.22■■■■□ 3.07
CCDC88BA6NC98 AP000550.4-202ENST00000639755 178 ntBASIC34.22■■■■□ 3.07
CCDC88BA6NC98 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
CCDC88BA6NC98 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
CCDC88BA6NC98 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC34.22■■■■□ 3.07
CCDC88BA6NC98 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
CCDC88BA6NC98 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms