Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC140134.1-201ENST00000511830 3544 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 GUCY1B2-204ENST00000531898 1979 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AL353763.1-201ENST00000624467 1628 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 RNU1-49P-201ENST00000363468 159 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 GCNT1P4-201ENST00000404096 329 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 STAT4-203ENST00000409995 709 ntTSL 5 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 UBE2V1P14-201ENST00000415815 558 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 CYP4F30P-202ENST00000420048 405 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 FTLP19-201ENST00000433300 394 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC011242.1-201ENST00000433596 1158 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC007679.3-201ENST00000434035 414 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 MTND2P2-201ENST00000434633 945 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 PPIAP10-201ENST00000438675 458 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 CLIC4P1-201ENST00000453177 535 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 RPS3AP53-201ENST00000454716 778 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 C1DP3-201ENST00000455013 423 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC078857.1-201ENST00000469870 667 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 RN7SL165P-201ENST00000477476 291 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 SNX18P24-201ENST00000505249 671 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC079148.1-201ENST00000565944 819 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC010487.1-201ENST00000594408 1172 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 MTATP6P2-201ENST00000603319 678 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC006924.1-201ENST00000610750 559 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC024255.1-201ENST00000614376 102 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 TCL6_3.1-201ENST00000619064 137 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AP000484.1-201ENST00000620067 1252 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 OR7A1P-202ENST00000641542 1158 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC015799.1-201ENST00000622996 3122 ntBASIC6.3□□□□□ -1.4
DKK3Q9UBP4 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
DKK3Q9UBP4 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AC006213.6-201ENST00000623722 4179 ntBASIC6.29□□□□□ -1.4
DKK3Q9UBP4 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AC004656.1-201ENST00000568479 4951 ntBASIC6.29□□□□□ -1.4
DKK3Q9UBP4 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AL451136.1-201ENST00000435399 325 ntBASIC6.29□□□□□ -1.4
DKK3Q9UBP4 ZNF101P1-201ENST00000435701 1720 ntBASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 RPL34P33-201ENST00000486062 334 ntBASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AC090958.1-201ENST00000511122 351 ntBASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 TRIM51DP-201ENST00000529746 596 ntBASIC6.29□□□□□ -1.4
DKK3Q9UBP4 OR4A42P-201ENST00000531397 938 ntBASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 MTND1P24-201ENST00000552175 861 ntBASIC6.29□□□□□ -1.4
DKK3Q9UBP4 DOCK11P1-201ENST00000553480 5932 ntBASIC6.29□□□□□ -1.4
DKK3Q9UBP4 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
DKK3Q9UBP4 LINC00556-201ENST00000569603 412 ntBASIC6.29□□□□□ -1.4
DKK3Q9UBP4 AC005726.4-201ENST00000582858 458 ntBASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms