Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC097527.1-201ENST00000437031 530 ntBASIC7.22□□□□□ -1.25
MSX1P28360 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC7.22□□□□□ -1.25
MSX1P28360 CD59-206ENST00000445143 825 ntAPPRIS P2 TSL 3 BASIC7.22□□□□□ -1.25
MSX1P28360 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC7.22□□□□□ -1.25
MSX1P28360 CALM1P2-201ENST00000452941 448 ntBASIC7.22□□□□□ -1.25
MSX1P28360 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC7.22□□□□□ -1.25
MSX1P28360 AC087312.1-201ENST00000471411 480 ntBASIC7.22□□□□□ -1.25
MSX1P28360 AC007537.2-201ENST00000472093 511 ntBASIC7.22□□□□□ -1.25
MSX1P28360 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC7.22□□□□□ -1.25
MSX1P28360 SNX5P1-201ENST00000505757 1041 ntBASIC7.22□□□□□ -1.25
MSX1P28360 AC097460.2-201ENST00000511857 741 ntBASIC7.22□□□□□ -1.25
MSX1P28360 OR4A45P-201ENST00000529954 901 ntBASIC7.22□□□□□ -1.25
MSX1P28360 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC7.22□□□□□ -1.25
MSX1P28360 AC007151.1-201ENST00000572774 483 ntBASIC7.22□□□□□ -1.25
MSX1P28360 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC7.22□□□□□ -1.25
MSX1P28360 MCM3AP-AS1-207ENST00000588753 589 ntTSL 4 BASIC7.22□□□□□ -1.25
MSX1P28360 OR7A18P-201ENST00000600416 277 ntBASIC7.22□□□□□ -1.25
MSX1P28360 MARK3P1-201ENST00000604796 643 ntBASIC7.22□□□□□ -1.25
MSX1P28360 AC087623.4-201ENST00000606593 695 ntBASIC7.22□□□□□ -1.25
MSX1P28360 AL136295.6-201ENST00000610486 658 ntBASIC7.22□□□□□ -1.25
MSX1P28360 MYO6-207ENST00000615563 4026 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 CCNB3-204ENST00000376042 4693 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
MSX1P28360 PIWIL3-204ENST00000533313 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 SERPINB13-202ENST00000344731 3114 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
MSX1P28360 AC023818.2-201ENST00000623817 2304 ntBASIC7.22□□□□□ -1.25
MSX1P28360 AL359922.3-201ENST00000624779 1670 ntBASIC7.22□□□□□ -1.25
MSX1P28360 TTLL9-211ENST00000620043 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 SPRY1-202ENST00000394339 2504 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 OR8H1-203ENST00000641600 2927 ntAPPRIS P2 BASIC7.21□□□□□ -1.25
MSX1P28360 HKR1-203ENST00000541583 2758 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
MSX1P28360 CACNB2-213ENST00000612134 3825 ntTSL 5 BASIC7.21□□□□□ -1.25
MSX1P28360 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
MSX1P28360 GCSAM-201ENST00000308910 3336 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.25
MSX1P28360 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
MSX1P28360 AL365475.1-201ENST00000565135 1949 ntBASIC7.21□□□□□ -1.25
MSX1P28360 GPC3-204ENST00000631057 1581 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
MSX1P28360 CASC19-205ENST00000641013 1411 ntBASIC7.21□□□□□ -1.25
MSX1P28360 PICALM-201ENST00000356360 1958 ntTSL 5 BASIC7.21□□□□□ -1.26
MSX1P28360 CYP8B1-201ENST00000316161 3974 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
MSX1P28360 MXI1-203ENST00000361248 2188 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 ANKS1B-201ENST00000329257 996 ntTSL 5 BASIC7.21□□□□□ -1.26
MSX1P28360 RNU6-483P-201ENST00000384088 108 ntBASIC7.21□□□□□ -1.26
MSX1P28360 RNU6-878P-201ENST00000384578 110 ntBASIC7.21□□□□□ -1.26
MSX1P28360 RNU6-1263P-201ENST00000384601 106 ntBASIC7.21□□□□□ -1.26
MSX1P28360 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
MSX1P28360 RPL34-201ENST00000394665 529 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.26
MSX1P28360 NHP2P2-201ENST00000396362 460 ntBASIC7.21□□□□□ -1.26
MSX1P28360 AC093642.1-201ENST00000412193 565 ntTSL 3 BASIC7.21□□□□□ -1.26
MSX1P28360 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC7.21□□□□□ -1.26
MSX1P28360 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 RPL36P1-201ENST00000419720 225 ntBASIC7.21□□□□□ -1.26
MSX1P28360 AL157884.1-201ENST00000424561 454 ntBASIC7.21□□□□□ -1.26
MSX1P28360 AL356583.2-201ENST00000426536 280 ntBASIC7.21□□□□□ -1.26
MSX1P28360 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC7.21□□□□□ -1.26
MSX1P28360 SAR1AP4-201ENST00000429225 591 ntBASIC7.21□□□□□ -1.26
MSX1P28360 SNRPGP6-201ENST00000451124 220 ntBASIC7.21□□□□□ -1.26
MSX1P28360 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC7.21□□□□□ -1.26
MSX1P28360 AC104849.1-201ENST00000462623 405 ntBASIC7.21□□□□□ -1.26
MSX1P28360 PA2G4P4-201ENST00000473864 1182 ntBASIC7.21□□□□□ -1.26
MSX1P28360 AC091544.1-201ENST00000484702 348 ntBASIC7.21□□□□□ -1.26
MSX1P28360 AC122714.1-201ENST00000502510 459 ntBASIC7.21□□□□□ -1.26
MSX1P28360 AC011352.3-201ENST00000505162 593 ntBASIC7.21□□□□□ -1.26
MSX1P28360 NR1I3-226ENST00000508740 977 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 AC114801.1-201ENST00000512633 297 ntBASIC7.21□□□□□ -1.26
MSX1P28360 MTCYBP43-201ENST00000513621 740 ntBASIC7.21□□□□□ -1.26
MSX1P28360 RN7SKP14-201ENST00000516000 329 ntBASIC7.21□□□□□ -1.26
MSX1P28360 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 AC093027.1-201ENST00000546698 429 ntBASIC7.21□□□□□ -1.26
MSX1P28360 LINC02289-202ENST00000556781 861 ntTSL 3 BASIC7.21□□□□□ -1.26
MSX1P28360 AL031722.1-201ENST00000570247 220 ntTSL 5 BASIC7.21□□□□□ -1.26
MSX1P28360 STX8-209ENST00000574431 731 ntTSL 3 BASIC7.21□□□□□ -1.26
MSX1P28360 FARSA-AS1-201ENST00000592636 241 ntTSL 5 BASIC7.21□□□□□ -1.26
MSX1P28360 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC7.21□□□□□ -1.26
MSX1P28360 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC7.21□□□□□ -1.26
MSX1P28360 RPL23AP90-201ENST00000603820 236 ntBASIC7.21□□□□□ -1.26
MSX1P28360 AC244196.3-201ENST00000614171 374 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
MSX1P28360 ACACA-232ENST00000614438 569 ntTSL 2 BASIC7.21□□□□□ -1.26
MSX1P28360 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC7.21□□□□□ -1.26
MSX1P28360 YWHAEP7-203ENST00000622054 312 ntBASIC7.21□□□□□ -1.26
MSX1P28360 AC068880.5-201ENST00000624331 290 ntBASIC7.21□□□□□ -1.26
MSX1P28360 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC7.21□□□□□ -1.26
MSX1P28360 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.26
MSX1P28360 MYB-235ENST00000533624 1818 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 MYB-238ENST00000534044 1812 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 MECOM-208ENST00000468789 3691 ntAPPRIS P3 TSL 2 BASIC7.21□□□□□ -1.26
MSX1P28360 ZNF69-202ENST00000429654 2010 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.26
MSX1P28360 LINC01105-203ENST00000431188 3329 ntTSL 5 BASIC7.21□□□□□ -1.26
MSX1P28360 C11orf63-203ENST00000531316 2782 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.26
MSX1P28360 AC105760.1-201ENST00000244820 2231 ntTSL 2 BASIC7.21□□□□□ -1.26
MSX1P28360 DIS3L2-202ENST00000325385 3501 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.26
MSX1P28360 MBTPS2-201ENST00000365779 4457 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 GNPAT-201ENST00000366647 2643 ntAPPRIS P2 TSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 AP000766.1-201ENST00000561746 4140 ntBASIC7.21□□□□□ -1.26
MSX1P28360 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 HYDIN2-203ENST00000614586 13885 ntBASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms