Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
HOXC4P09017 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
HOXC4P09017 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.51
HOXC4P09017 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
HOXC4P09017 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.51
HOXC4P09017 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
HOXC4P09017 MTND5P12-201ENST00000502851 1449 ntBASIC5.65□□□□□ -1.51
HOXC4P09017 AL355834.1-201ENST00000556602 3965 ntBASIC5.65□□□□□ -1.51
HOXC4P09017 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXC4P09017 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC4P09017 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXC4P09017 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC4P09017 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC4P09017 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC4P09017 RNU1-59P-201ENST00000364829 162 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 RNA5SP30-201ENST00000365552 115 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 OR3A2-201ENST00000408891 1076 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXC4P09017 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXC4P09017 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXC4P09017 TNPO1P1-201ENST00000423641 1138 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 CRIP1P1-201ENST00000427567 185 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXC4P09017 AC004870.2-201ENST00000445615 831 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXC4P09017 EEF1B2P6-201ENST00000445713 673 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
HOXC4P09017 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC4P09017 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.64□□□□□ -1.51
HOXC4P09017 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXC4P09017 HMGN2P47-201ENST00000559378 272 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXC4P09017 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXC4P09017 U1.25-201ENST00000614085 162 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 AC022467.1-201ENST00000614738 749 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 U1.34-201ENST00000618578 162 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC4P09017 U1.31-201ENST00000620022 160 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC4P09017 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
HOXC4P09017 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC4P09017 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC4P09017 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
HOXC4P09017 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
HOXC4P09017 MFSD8-239ENST00000641590 2479 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC4P09017 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXC4P09017 MTCO1P11-201ENST00000429111 1528 ntBASIC5.64□□□□□ -1.51
HOXC4P09017 MFSD8-219ENST00000641228 2559 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 UGT2B24P-201ENST00000514441 1597 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXC4P09017 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXC4P09017 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
HOXC4P09017 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
HOXC4P09017 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXC4P09017 AC093671.1-201ENST00000624981 2929 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXC4P09017 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXC4P09017 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXC4P09017 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
HOXC4P09017 RN7SKP124-201ENST00000364730 341 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXC4P09017 U3.23-201ENST00000391132 200 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 AL121977.1-201ENST00000401636 979 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXC4P09017 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXC4P09017 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXC4P09017 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXC4P09017 AC021876.1-201ENST00000425959 359 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.63□□□□□ -1.51
HOXC4P09017 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXC4P09017 AC073410.1-201ENST00000435125 589 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXC4P09017 RSU1P1-201ENST00000453416 441 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 RPL7L1P4-201ENST00000513004 707 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXC4P09017 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXC4P09017 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXC4P09017 AC007225.2-201ENST00000562529 256 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 AC015720.2-201ENST00000567709 334 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXC4P09017 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.63□□□□□ -1.51
HOXC4P09017 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXC4P09017 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXC4P09017 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 AL591135.1-201ENST00000401578 5914 ntBASIC5.63□□□□□ -1.51
HOXC4P09017 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC4P09017 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
HOXC4P09017 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms